Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq38433 349 1e-93 seq16269 203 1e-49 seq15179 158 4e-36 seq15243 122 3e-25 seq6643 105 2e-20 seq15691 91.5 5e-16 seq13935 84.2 8e-14 seq45011 77.0 1e-11 >seq38433 Length=1672 Score = 349 bits (386), Expect = 1e-93 Identities = 411/544 (76%), Gaps = 19/544 (3%) Strand=Plus/Plus Query 51 CCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTG 109 |||| ||||| |||||| | | |||||| | | | |||||| | | | ||||| Sbjct 729 CCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTG 788 Query 110 CTCTACCTCCGG-GAAGAA-ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCA 167 ||||||| |||| || ||| |||| | |||| |||||||| ||||||||||||||| Sbjct 789 CTCTACCCCCGGAGATGAATTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCA 846 Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 |||||| | ||||||||||||||||||||| | ||||| ||||||| || | |||||| Sbjct 847 GCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCA 906 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | ||| |||||||||||||| || |||||| ||||||||||||||||| ||| Sbjct 907 ACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAG 966 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| | Sbjct 967 ATCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCC 1025 Query 348 TACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTC 407 | ||||| ||| | | ||||||||| || ||| || || |||| | | |||| | | Sbjct 1026 TTCGGCTCCCCTATTC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATAC 1083 Query 408 AAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467 |||||| |||| ||||| | ||||| || ||||| || | ||||| | || Sbjct 1084 AAAAGGTACGCAGTCACACG---CCTAA---GC----GTGCTCCCACTGCTTGTACGTAC 1133 Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | |||||||||| || ||||||||||| | | ||||| |||||| ||||||||||||||| Sbjct 1134 ACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 1193 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 ||| || | |||||||||| |||||||||||| ||| || ||||||| ||| |||| Sbjct 1194 ACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 1253 Query 587 ACAC 590 | || Sbjct 1254 AGAC 1257 >seq16269 Length=636919 Score = 203 bits (224), Expect = 1e-49 Identities = 290/401 (72%), Gaps = 22/401 (5%) Strand=Plus/Minus Query 206 CAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGC 265 |||| |||| || | | |||||| | ||| ||||||| ||||||| || |||||| Sbjct 375698 CAGGATATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTTACCCAA 375639 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATA 323 |||||| |||| |||||||||||||| | |||||||| | | | ||| || | Sbjct 375638 GCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATT--- 375582 Query 324 CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGCGAC 379 ||||||| |||||||||||||||||||| || || | ||||| || | Sbjct 375581 -GCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAACCAAGC--C 375528 Query 380 ACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAG 438 || | | | |||| |||||||||||||| |||||||| |||| | | || || | Sbjct 375527 ACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA-GCTTCCACAACG 375469 Query 439 GCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA 498 | | |||| || | ||| || | ||||||| || ||||||||||||||| Sbjct 375468 CCTC-----CTCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG 375414 Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 ||||| ||||||||| ||||||||||||||| | |||||||||||||| |||||||||| Sbjct 375413 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 375354 Query 559 AGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||| |||||||| | |||||||||| ||| || Sbjct 375353 AGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 375313 >seq15179 Length=81045 Score = 158 bits (174), Expect = 4e-36 Identities = 375/556 (67%), Gaps = 47/556 (8%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || | |||||| || || | |||||| |||| |||||||||| Sbjct 52893 ATTCGGAGTTTCCCTGGGGTTGGTAAGGTT-TGACCACCCTAGCCCATTGAGTGCTCTAC 52835 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 ||| || | ||| ||||| || |||| |||||| ||| |||||||||| | Sbjct 52834 CTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATC 52775 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || || Sbjct 52774 CGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGT 52715 Query 236 GGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATCACTT 294 ||||||||||||||| | | ||| | | ||||||||||| ||||| |||||| | Sbjct 52714 GGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATC 52655 Query 295 CGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA-CGGC 353 | |||||||| || | | | | | |||| || || | | | || | Sbjct 52654 GGTTTCGGGTC-AAATAGGAAGAACTAGAAG----ATTC-CAC---CTCTGGAAAGCGCC 52604 Query 354 TACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAG 412 ||| || | || |||| || | | || | ||||| | | ||| | |||||| Sbjct 52603 TACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCAAAAG 52547 Query 413 GCACGCCGTCA-CCTG-GTAC------CTAA--------------AAGGCACT----TCA 446 | ||||||| | || || | |||| ||||| || || Sbjct 52546 GTACGCCGTTAGAGTGAGTGCGCTTTACTAATAGAATTCAAAGTCAAGGCTCTAAGCTCC 52487 Query 447 GCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCAGGG 501 |||| |||| |||||| ||| | | |||||| ||||| ||||||| || Sbjct 52486 GCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGG 52427 Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || |||||||||||||||||||||||||||| |||||||||||| |||| || ||||| Sbjct 52426 GTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGG 52367 Query 562 CTTAACGGGTGGTCCC 577 |||| |||||||||| Sbjct 52366 CTTAGAGGGTGGTCCC 52351 >seq15243 Length=83818 Score = 122 bits (134), Expect = 3e-25 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 || ||||||||||||||| ||||| ||||||||| ||||||||||||||| | |||| Sbjct 54513 GTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCT 54454 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597 |||||||||| |||||||||||| ||| |||||||| | |||||||||| ||| Sbjct 54453 ATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTC 54394 Query 598 CA 599 || Sbjct 54393 CA 54392 Score = 93.3 bits (102), Expect = 2e-16 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 489 CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 ||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| Sbjct 54317 CTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCC 54258 Query 549 AGGAGTATTTAGGCTT 564 |||||||||||| ||| Sbjct 54257 AGGAGTATTTAGCCTT 54242 >seq6643 Length=22298 Score = 105 bits (116), Expect = 2e-20 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 489 CTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCA 548 ||||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| Sbjct 801 CTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCC 860 Query 549 AGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 861 AGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 911 >seq15691 Length=135072 Score = 91.5 bits (100), Expect = 5e-16 Identities = 89/115 (77%), Gaps = 6/115 (5%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||||||| || |||||||||| ||||||| ||| | | | ||| || |||| |||||| Sbjct 35420 GCTGCACCTCAACGCATTTCGGGAAGAACCATCTAACTCTAGGTTCGAGTGGCATTTCAC 35361 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 ||||| ||||| || || | | |||||| | ||| ||||||| ||||||| Sbjct 35360 CCCTAACCACA------CCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCAC 35312 >seq13935 Length=47331 Score = 84.2 bits (92), Expect = 8e-14 Identities = 150/213 (70%), Gaps = 17/213 (8%) Strand=Plus/Plus Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGCGACA 380 ||||||| ||||||||||||||||||| ||| || | ||||| || || Sbjct 29946 GCCCTATGAAGACTCGCTTTCGCTACGGC---CCCGGTGGGTTCCCTTAACCAAGC--CA 30000 Query 381 CAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGG 439 | | | | ||| |||||||||||||| |||| ||| |||| | | || || | Sbjct 30001 CTGCCTATGAGTCGTCGGCTCATTCTTCAACAGGCGCGCGGTCAGA-GCTTCCACAACGC 30059 Query 440 CACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAG 499 | | |||| || | ||| || | ||||||| || ||||||||||||||| | Sbjct 30060 CTC-----CTCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGG 30114 Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532 |||| ||||||||| |||||||||||| ||||| Sbjct 30115 GGGTTCTTTTCACCCTTCCCTCACGGT-CTTGT 30146 >seq45011 Length=42815 Score = 77.0 bits (84), Expect = 1e-11 Identities = 95/129 (74%), Gaps = 7/129 (5%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCG--CCA-----GGGGTACTTTTCACCTTTCCCTCA 522 |||||| || |||||||||||||| | | ||||| ||||||||| ||||||| Sbjct 27438 GGTTTCGTGTTCTATTTCACTCCCCTATCTAAGAGGGGGGTTCTTTTCACCCCTCCCTCA 27379 Query 523 CGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAG 582 | |||| | |||||||||||||| || ||| ||||| | | || ||||| | | Sbjct 27378 GGATACTACTTCGCTATCGGTCACCCAGAAGTCTTTAGCCCTGCAAGGCGGTCCTTGCTG 27319 Query 583 ATTCACACG 591 ||||||||| Sbjct 27318 ATTCACACG 27310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816780480512