Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq38433 470 4e-130 seq16269 226 7e-57 seq15243 116 9e-24 seq45011 104 6e-20 seq13935 104 6e-20 seq15179 102 2e-19 seq6643 96.9 9e-18 >seq38433 Length=1672 Score = 470 bits (520), Expect = 4e-130 Identities = 358/411 (87%), Gaps = 9/411 (2%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 882 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 938 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 939 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 994 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||||||||||| ||| | Sbjct 995 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTTCGGCTCCCCTATTCGGTTAACCTT-G 1052 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | || ||| ||||||||||||||||||||||||||||||||||||||| | | ||| | Sbjct 1053 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGT 1112 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||| Sbjct 1113 GCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTTC 1172 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1173 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTG 1232 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||| | | |||| ||| ||||||| Sbjct 1233 GAGGATGGTCCCCCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTC 1283 >seq16269 Length=636919 Score = 226 bits (250), Expect = 7e-57 Identities = 303/407 (74%), Gaps = 16/407 (4%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | || |||||| ||||||||||| |||||| ||||| |||||||| ||| Sbjct 375691 TCCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TTACCCAAGCTT- 375635 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||| ||||||||| ||| | || |||||| || | || ||| | ||| Sbjct 375634 CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGTGACAATT-GCC 375579 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 ||| |||||||||||| ||||||| |||| | ||| |||| | ||||||| Sbjct 375578 CTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCT 375521 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC----CAACAAAGTGGGCTCC 253 || |||||| | | |||| | ||| ||| |||| |||| | |||| | |||| Sbjct 375520 ATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCTTCCACAACGCCTCCTCC 375461 Query 254 CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTC 313 ||||||||| || |||||||||| | ||||||||||||||| | |||||||||||| Sbjct 375460 CACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTC 375402 Query 314 GCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGA 373 || |||||||||||||||| ||| |||||||||| ||| |||||||||||||| | | Sbjct 375401 ACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGG 375342 Query 374 TGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| | ||||| || || | ||||| || | ||||||| Sbjct 375341 TGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 375295 >seq15243 Length=83818 Score = 116 bits (128), Expect = 9e-24 Identities = 110/139 (79%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTA 341 ||||||||||||||| | |||||||||||| || |||||||||||||||| ||| ||| Sbjct 54511 TCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTA 54453 Query 342 TCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTC 401 ||||||| ||| |||||||||||||| | | |||||| | ||||| || || | Sbjct 54452 TCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCC 54393 Query 402 TCGTGCTCCGTCCTACTCG 420 ||||| || | ||||||| Sbjct 54392 ACGTGCCCCATGCTACTCG 54374 Score = 87.8 bits (96), Expect = 4e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||| Sbjct 54307 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 54248 Query 362 AGCCTT 367 |||||| Sbjct 54247 AGCCTT 54242 >seq45011 Length=42815 Score = 104 bits (114), Expect = 6e-20 Identities = 105/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC------G 302 ||||||||||| || || ||||||||| | |||||||||||||||| || | Sbjct 27461 GCTCCCACTGCCTGAGAGCTTACGGTTTCGTGTTCTATTTCACTCCCCTATCTAAGAGGG 27402 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||| || ||||||| | ||||| ||| |||||||||| ||| ||| |||| Sbjct 27401 GGGTTCTTTTCACCCCTCCCTCAGGATACTACTTCGCTATCGGTCACCCAGAAGTCTTTA 27342 Query 363 GCCTTGGAGGATGGTCC 379 ||| || | | ||||| Sbjct 27341 GCCCTGCAAGGCGGTCC 27325 >seq13935 Length=47331 Score = 104 bits (114), Expect = 6e-20 Identities = 151/207 (73%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||||| |||||||||||| ||||||| | || | ||| |||| | ||||||| Sbjct 29946 GCCCTATGAAGACTCGCTTT-CGCTACGGCCCCGGTGGGTTCCCTTAACCAA-GCCACTG 30003 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC----CAACAAAGTGGGC 250 || ||||| | | |||| | ||| ||| ||| |||| | |||| | | Sbjct 30004 CCTATGAGTCGTCGGCTCATTCTTCAACAGGCGCGCGGTCAGAGCTTCCACAACGCCTCC 30063 Query 251 TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTT 310 |||||||||||| || |||||||||| | ||||||||||||||| | ||||||||| Sbjct 30064 TCCCACTGCTTGAGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGAT-GGGGGTTCTT 30122 Query 311 TTCGCCTTTCCCTCACGGTACTAGTTC 337 ||| || |||||||||||| || |||| Sbjct 30123 TTCACCCTTCCCTCACGGT-CTTGTTC 30148 >seq15179 Length=81045 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 52477 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 52419 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 52418 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 52359 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 52358 GTGGTCCCCC 52349 >seq6643 Length=22298 Score = 96.9 bits (106), Expect = 9e-18 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||| Sbjct 811 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 870 Query 362 AGCCTTGGAGGATGGTCC 379 ||||||| | | |||||| Sbjct 871 AGCCTTGCAAGGTGGTCC 888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241040187392