Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq10081 217 2e-54 seq16013 82.4 9e-14 seq16010 73.4 5e-11 seq13714 73.4 5e-11 >seq10081 Length=34917 Score = 217 bits (240), Expect = 2e-54 Identities = 168/197 (85%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 1 CGTCTCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGT 60 || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 12313 CGACTCTAGAAACCAACAAAATAGAACCGCACGTCCTATTTTATTATTCCATGCTAATGT 12372 Query 61 ATTCGGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCT 120 |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12373 ATTCAGGCGCAGGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCC 12432 Query 121 CCGCACA-CCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTAC 178 | |||| ||||| || ||||| | |||||||||||||||| | | | | |||||| Sbjct 12433 CGACACACCCAATAAAGGGCATGCCGGCTCACCAAGAGGTAAGACCCAGCCAGACAGTAC 12492 Query 179 TCGCCGTGAGGCGGACC 195 ||||||||| |||| Sbjct 12493 ATACCGTGAGGCAGACC 12509 >seq16013 Length=170587 Score = 82.4 bits (90), Expect = 9e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 94537 CCAACACAATAGGACCGGAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 94479 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| ||||||||||| |||| |||| ||| Sbjct 94478 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 94440 >seq16010 Length=173124 Score = 73.4 bits (80), Expect = 5e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| | | |||||| | |||| |||||||||||||| | | ||||| Sbjct 55959 CCAACACAATAGGACCAGAA-TCCTATAATGTTATCCCATGCTAATGTATACAGAGCGTA 55901 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | |||||||| ||||||||||| |||| |||| ||| Sbjct 55900 GCCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 55862 >seq13714 Length=42945 Score = 73.4 bits (80), Expect = 5e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| | | |||||| | |||| ||| |||||||||| | | ||||| Sbjct 8084 CCAACACAATAGGACCAGAA-TCCTATAATGTTATCCCACGCTAATGTATACAGAGCGTA 8142 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| ||||||||||| |||| |||| ||| Sbjct 8143 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 8181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594940022592