Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq38433 221 3e-55 seq15243 185 2e-44 seq15179 163 7e-38 seq12853 100 7e-19 seq12160 78.8 2e-12 seq16042 73.4 9e-11 >seq38433 Length=1672 Score = 221 bits (244), Expect = 3e-55 Identities = 298/408 (73%), Gaps = 13/408 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||| | | || ||| | Sbjct 276 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 335 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 336 CAGGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCA 395 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| || |||||| || ||| Sbjct 396 GCATTCGCACTTCTGAT-ACCTCCAGCATGCC-TCACAGCACACCTTCACAGGCTTACAG 453 Query 178 GACGCTCCCCTACCCAACCACACAG-------GTTGCCACAGCTTCGGCGGATAACTTAA 230 ||||||||||||||||| || || | |||| ||||||||| | || ||| Sbjct 454 AACGCTCCCCTACCCAACAACGCATCAGCGTCGCTGCCGCAGCTTCGGTGCATGGTTTA- 512 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 513 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAA 572 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 573 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACT 632 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 633 TAACCATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 680 >seq15243 Length=83818 Score = 185 bits (204), Expect = 2e-44 Identities = 295/410 (72%), Gaps = 19/410 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 55397 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 55338 Query 61 CTGGAACCCTT-GGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 ||||||||| || | | || | | |||||| |||| | || |||||| ||| Sbjct 55337 AAGGAACCCTTAGGTTTTTTGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCC 55278 Query 119 TGCATTCTCACT--CGCATCAACTCCACCACACAGTCAC-CCGGCAGCTTCACCACT-GA 174 ||||||| || ||| || |||| ||| || | |||| | |||| || || | Sbjct 55277 GACATTCTCGCTTCCGCTTCG--TCCATCACCGGCTCGCACCGGTA-CTTC-CCTCTAGG 55222 Query 175 CACGACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 | ||||||||||||| | ||| | |||| |||||||| ||| |||| Sbjct 55221 CGGAACGCTCCCCTACCGATGTTTTTTTACA---TCCCACTGCTTCGGCAGATCGCTTA- 55166 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || |||||||||||||||||||||||||| Sbjct 55165 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAA 55107 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||| Sbjct 55106 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACT 55047 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| |||| |||||||||| |||||| Sbjct 55046 GACCGGTCATTTAGGGGCCTTAGCTGGTGATACGGGCTGTTTCTCTCTCG 54997 >seq15179 Length=81045 Score = 163 bits (180), Expect = 7e-38 Identities = 152/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 53135 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 53079 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 53078 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 53019 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| ||||||| ||||||| | |||||||||| Sbjct 53018 CTCGATCACTTCCTTTTCCACTAAGTTCTTGCTTAGGGACCTTAGCGTACGATCTGGGCT 52959 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 52958 GTTTCCCTCTCG 52947 >seq12853 Length=46119 Score = 100 bits (110), Expect = 7e-19 Identities = 81/97 (84%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 ||||||| | ||| ||||||| | | || || ||||||||||||||||||||||||| Sbjct 34592 AGCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCA 34650 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||| |||||||||| | || |||||||||| |||||| Sbjct 34651 AGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTA 34687 >seq12160 Length=49371 Score = 78.8 bits (86), Expect = 2e-12 Identities = 76/97 (78%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 259 CTTGACCAGT--GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC 316 |||||||| | || || |||||||||||||||| |||||||||| | || ||||| | Sbjct 32818 CTTGACCAATTTGAAAAATCACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTTC 32759 Query 317 TGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 ||| ||||| ||| | | || |||||| ||||||| Sbjct 32758 TGGCTGTCTCAGCACCCCTACCTCCTTTATCACTGAG 32722 >seq16042 Length=222403 Score = 73.4 bits (80), Expect = 9e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 336 ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCC 395 || |||||| ||||||| || |||||||||||||||| ||||| |||||||||||| Sbjct 189362 ACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCC 189303 Query 396 TCTCG 400 ||||| Sbjct 189302 TCTCG 189298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177069043712