Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq10081 224 1e-56 seq16013 132 5e-29 seq16010 120 3e-25 seq13714 120 3e-25 seq16040 84.2 2e-14 >seq10081 Length=34917 Score = 224 bits (248), Expect = 1e-56 Identities = 164/189 (87%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||| |||| |||||||||| ||||||||||||||| || ||||| Sbjct 12431 GGAACCAGGACTTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTGCGCCTGAATA 12372 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| || Sbjct 12371 CATTAGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAGTCG- 12313 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||| ||||| | ||||||| ||| | ||||||||||| Sbjct 12312 CCGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTCCGTTGCTAGAGGTGAAATTC 12253 Query 181 TTGGATTTA 189 ||||||||| Sbjct 12252 TTGGATTTA 12244 >seq16013 Length=170587 Score = 132 bits (146), Expect = 5e-29 Identities = 141/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 94440 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 94499 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| ||| || | ||| || |||||| Sbjct 94500 TGGGATAACATTATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATG 94557 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 94558 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 94617 Query 189 AT 190 || Sbjct 94618 AT 94619 >seq16010 Length=173124 Score = 120 bits (132), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| | || |||| | |||||||| || Sbjct 55862 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGGCTACGCTCTGTATACATTAGCA 55921 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | ||| ||||| ||| || | || || |||||| Sbjct 55922 TGGGATAACATTATAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGTGATCGGA-GTAATG 55979 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || | | ||||||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 55980 ATTAGCAGGGATAGTCGGGGGCATTCGTATTTCATAGTCATAGGTGAAATTCTTGGATTT 56039 Query 189 AT 190 || Sbjct 56040 AT 56041 >seq13714 Length=42945 Score = 120 bits (132), Expect = 3e-25 Identities = 138/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| | Sbjct 8181 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCG 8122 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | ||| ||||| ||| || | ||| || |||||| Sbjct 8121 TGGGATAACATTATAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATG 8064 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||| ||||| | ||||| || |||| ||||||||||||||||||| Sbjct 8063 ATTAACAGGGACAGTTGGGGGCATTCGTATTTCATAGTCATAGGTGAAATTCTTGGATTT 8004 Query 189 AT 190 || Sbjct 8003 AT 8002 >seq16040 Length=253868 Score = 84.2 bits (92), Expect = 2e-14 Identities = 132/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATT 64 ||| | | |||||||||| | || ||| | |||||||| |||| |||| | ||||||| Sbjct 60072 CAGCAATGTTACTTTGAAGGA-TTGGAGTGCTCAAAGCAAGCCTACGCTCTGCATACATT 60130 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT-TTCTAGGACCGCCCG 123 | ||||| |||| | |||||| | | || || || ||| || ||| | || | | Sbjct 60131 AGCATGGGATAACATTATAGGAT-TCCAGTCCTGTTATGTTGGACTTCGGGAACAGA--G 60187 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| || ||||||||||||| | |||| || || ||||||||| ||| || Sbjct 60188 TAATGATTAACCGGGATAGTCGGGGGCATTCATATTTCATAGTTAAAGGTGAATTTCATG 60247 Query 184 GAT 186 ||| Sbjct 60248 GAT 60250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511776363520