Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq15179 190 3e-46 seq16293 87.8 3e-15 seq15764 87.8 3e-15 seq16155 82.4 1e-13 >seq15179 Length=81045 Score = 190 bits (210), Expect = 3e-46 Identities = 182/233 (78%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| || ||| |||||| ||||| ||| |||| ||||| | ||| Sbjct 54908 AACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAGACCATAGGTTGGCCCAAG 54849 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----ACGCCCACGACGGAT 162 || |||||||||||||| || ||||||| || | ||| || || ||| ||| Sbjct 54848 CCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGAT 54789 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAA 222 ||| ||||||||||||| ||||||||| |||||| ||| ||| || |||| || |||||| Sbjct 54788 AGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAA 54729 Query 223 CAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 54728 CAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 54676 >seq16293 Length=373889 Score = 87.8 bits (96), Expect = 3e-15 Identities = 104/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----AC 149 ||||| | ||| ||| ||| |||||||||| || |||||| || | ||| || Sbjct 364752 AGGTTGGCCCAACCCAGTCTTCTCGTACTAGGGTTGGCTCCTTGCAGTTCTCCCTATAAC 364811 Query 150 GCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTC 209 | |||| |||||| ||||||||||||| |||||||| |||||| ||| ||| || | Sbjct 364812 AACAACGATAGATAGGAACCGAACTGTCTCATGACGTTCTAAACCCAACTCACGTACCAC 364871 Query 210 TTTAATGGGCGAACAGCCCAA 230 || ||| |||||| ||||| Sbjct 364872 TTGAATCAACGAACAACCCAA 364892 >seq15764 Length=134050 Score = 87.8 bits (96), Expect = 3e-15 Identities = 104/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 94 AGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT----AC 149 ||||| | ||| ||| ||| |||||||||| || |||||| || | ||| || Sbjct 5238 AGGTTGGCCCAACCCAGTCTTCTCGTACTAGGGTTGGCTCCTTGCAGTTCTCCCTATAAC 5297 Query 150 GCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTC 209 | |||| |||||| ||||||||||||| |||||||| |||||| ||| ||| || | Sbjct 5298 AACAACGATAGATAGGAACCGAACTGTCTCATGACGTTCTAAACCCAACTCACGTACCAC 5357 Query 210 TTTAATGGGCGAACAGCCCAA 230 || ||| |||||| ||||| Sbjct 5358 TTGAATCAACGAACAACCCAA 5378 >seq16155 Length=234059 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || || Sbjct 20726 CCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGA 20667 Query 266 GCCGACATCG 275 | |||||||| Sbjct 20666 GTCGACATCG 20657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780458954368