Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq12481 215 1e-53 seq13482 188 2e-45 seq45077 167 6e-39 seq13256 147 5e-33 seq14772 118 3e-24 seq14077 109 1e-21 seq11906 104 6e-20 seq9290 104 6e-20 seq10869 87.8 4e-15 seq14713 84.2 5e-14 seq15738 82.4 2e-13 seq13374 82.4 2e-13 seq12917 80.6 7e-13 >seq12481 Length=43633 Score = 215 bits (238), Expect = 1e-53 Identities = 284/392 (72%), Gaps = 30/392 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 38733 TTCACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 38674 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 38673 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 38614 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||| ||||| |||| |||||| ||| | ||| || | ||| Sbjct 38613 GGCTGATCATCCTCTCGGACAAGCTATTGATCATCGCCTTGGTAAGTTATTGCCTCACCA 38554 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 38553 ACTAGCTAATCAGACGCGAGCCCCTCC----TTGGGCGG------ATTCCTCCT-TTTGC 38505 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 38504 TCCTCAGCC--TACAGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 38447 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | | | | | |||||||||||||||||||| ||| || || |||| Sbjct 38446 GGTCCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 38401 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCC 396 |||| || ||||||||||||| || |||| Sbjct 38400 ---CCGTCCGGCTTGCATGTGTTAAGCATGCC 38372 >seq13482 Length=48067 Score = 188 bits (208), Expect = 2e-45 Identities = 277/392 (71%), Gaps = 30/392 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| ||| ||||| || ||| ||| Sbjct 36472 TTCACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTCAGTCAGGTTTTCGCTTATT 36531 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||||||||||| || | ||||||||||| ||||||| Sbjct 36532 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGCCTAGGTCGTGTCTCAGTCCCAGTGT 36591 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| | |||||||| ||||||||| |||| |||||| ||| || ||| || ||| Sbjct 36592 GGCTGATTATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTTACCA 36651 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | || | | | || | || ||| ||| |||| Sbjct 36652 ACTAGCTAATCAGACGCGAGTCCCTAC----TTGGGCGG------ATTCCTCCT-TTTGC 36700 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||| ||| | || | ||||||| |||| Sbjct 36701 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTTCAGCGATTGTTCCCCTCCCAAGGGCA 36758 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || Sbjct 36759 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACA-----------CCAC 36801 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCC 396 || |||| |||||||||||||||| || |||| Sbjct 36802 TTTCCGTCCGACTTGCATGTGTTAAGCATGCC 36833 >seq45077 Length=170547 Score = 167 bits (184), Expect = 6e-39 Identities = 151/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||||||| |||||| || |||| ||| ||||| |||||||||| ||| ||||||||| Sbjct 58346 CTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCAC 58287 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||| ||||| |||||| || |||||||||||| |||||||||||| |||||| Sbjct 58286 TGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAA 58227 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATC 200 |||||||||| | ||| | | || ||| ||| ||||| ||||||| ||||| | | Sbjct 58226 AGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACG 58167 Query 201 TGGGTTCATC 210 ||| ||||| Sbjct 58166 CGGGCTCATC 58157 Score = 91.5 bits (100), Expect = 4e-16 Identities = 112/154 (73%), Gaps = 17/154 (11%) Strand=Plus/Minus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| |||||||||| ||| | ||||||| ||| | ||| | | |||| Sbjct 115742 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCGGGTTCTTACGCGTTAC 115683 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||||||||||| ||| || || |||| |||| |||||||| Sbjct 115682 TCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 115640 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| || ||||||||||||||| ||||| Sbjct 115639 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 115606 >seq13256 Length=36008 Score = 147 bits (162), Expect = 5e-33 Identities = 134/168 (80%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||||||| || ||| || |||| ||| ||||| |||||||||| ||| ||||||||| Sbjct 23620 CTTCTTCACTCATGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCAC 23679 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||| ||||| |||||| || |||||||||||| |||||||||||| |||||| Sbjct 23680 TGCTGCC-CCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAA 23738 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 |||||||||| | ||| | | | ||| ||| ||||| ||||||| Sbjct 23739 AGACCAGCTAAGCATCATTGGCATGGTCAGCCTTTACCTGACCAACTA 23786 >seq14772 Length=65063 Score = 118 bits (130), Expect = 3e-24 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| |||||| | | || |||| ||| ||||||||| ||||||||||||| || Sbjct 60416 TCAGGCTTTCGCCCACTACGAAAAATTCTCCATTGCTGCCTCTCGTAGGAGTCTGGGTCG 60475 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||||| |||||||||||| ||||||| || || |||||| |||| | || | | | Sbjct 60476 TGTCTCAGTCCCAGTGTGGCTGATCATCCTATCGGATCAGCTACAGATCATTGCTTTGTT 60535 Query 168 GGGCCATTACCCCGCCAACTAGC 190 || ||| || | || | |||| Sbjct 60536 AAGCTATTGCCTCACCGATTAGC 60558 >seq14077 Length=48069 Score = 109 bits (120), Expect = 1e-21 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || |||||||||| ||||||||||||||||||||| |||| ||||||| ||||||||||| Sbjct 10540 AAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTTTCTCAGTCCCAGTGTGGCT 10599 Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 | |||| |||| ||||||||| ||| || ||| Sbjct 10600 GATCATAGTCTCGGACCAGCTACTAATCATCTCCT 10634 >seq11906 Length=25670 Score = 104 bits (114), Expect = 6e-20 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| |||||| | | ||| |||||| ||| | | |||||| | |||||| Sbjct 20757 TTCACGACCCATGGGCCTTTGACCTCCACACGGCATTGCTCCGTTAGGCTTTCACCCATT 20816 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||| ||| |||||| ||| |||||||| ||| |||||||||| ||||| | Sbjct 20817 ACGGAAAATTCTCCAGTGCTGCTTCCTGTAGGAGTTTGGGTTGTGTCTCAGTCCCAGTAT 20876 Query 125 GGCTGGTCATCCTCTCA 141 ||||| ||||||||||| Sbjct 20877 GGCTGATCATCCTCTCA 20893 >seq9290 Length=12825 Score = 104 bits (114), Expect = 6e-20 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| |||||| | | ||| |||||| ||| | | |||||| | |||||| Sbjct 9088 TTCACGACCCATGGGCCTTTGACCTCCACACGGCATTGCTCCGTTAGGCTTTCACCCATT 9029 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||| ||| |||||| ||| |||||||| ||| |||||||||| ||||| | Sbjct 9028 ACGGAAAATTCTCCAGTGCTGCTTCCTGTAGGAGTTTGGGTTGTGTCTCAGTCCCAGTAT 8969 Query 125 GGCTGGTCATCCTCTCA 141 ||||| ||||||||||| Sbjct 8968 GGCTGATCATCCTCTCA 8952 >seq10869 Length=24398 Score = 87.8 bits (96), Expect = 4e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 5734 AAAATTCCCCACCGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTTCCAGTGT 5679 >seq14713 Length=63018 Score = 84.2 bits (92), Expect = 5e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||||||||| |||||||||||||||||||||| |||||||||||| ||||||| Sbjct 35539 AAAATTCCCCACCGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 35594 >seq15738 Length=127347 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 |||| | || |||| ||| | | ||||||||||||||| ||| | |||||||||| | || Sbjct 65644 ATTGCGGAAAATTCTCCATTACAGCCTCCCGTAGGAGTTTGGTC-GTGTCTCAGTCCAAG 65702 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGC 148 |||||||| ||||||| || || |||| Sbjct 65703 TGTGGCTGATCATCCTATCGGATCAGC 65729 >seq13374 Length=38426 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 |||| | || |||| ||| | | ||||||||||||||| ||| | |||||||||| | || Sbjct 18245 ATTGCGGAAAATTCTCCATTACAGCCTCCCGTAGGAGTTTGGTC-GTGTCTCAGTCCAAG 18303 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGC 148 |||||||| ||||||| || || |||| Sbjct 18304 TGTGGCTGATCATCCTATCGGATCAGC 18330 >seq12917 Length=32918 Score = 80.6 bits (88), Expect = 7e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 76 CCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||||||||| ||||| ||||| || |||||||||||| |||||||||||| ||||| Sbjct 17559 CCCACTGCTGCCCCCCGTGGGAGTTCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATC 17500 Query 136 CTCT 139 | || Sbjct 17499 CGCT 17496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221848844288