Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq12481 311 3e-82 seq13482 295 2e-77 seq45077 260 4e-67 seq13256 143 8e-32 seq14772 118 3e-24 seq11906 98.7 3e-18 seq9290 98.7 3e-18 seq14077 95.1 4e-17 seq10869 78.8 3e-12 seq14713 75.2 3e-11 seq12917 75.2 3e-11 >seq12481 Length=43633 Score = 311 bits (344), Expect = 3e-82 Identities = 276/343 (80%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || ||||||||||||| ||||| |||| Sbjct 38536 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATCAATAGCTTGT 38595 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 38596 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 38655 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 38656 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTCGA 38715 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| |||||||||| || ||| Sbjct 38716 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 38775 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 38776 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 38835 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 38836 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 38877 >seq13482 Length=48067 Score = 295 bits (326), Expect = 2e-77 Identities = 275/347 (79%), Gaps = 3/347 (1%) Strand=Plus/Minus Query 156 GACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGC 215 ||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 36673 GACTCGCGTCTGATTAGCTAGTTGGTAAGGCAATAGCTTACCAAGGCGATGATCAGTAGC 36614 Query 216 CGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAG 275 | | |||||| | ||| |||||| ||| ||||||||||| | | |||||||||||| Sbjct 36613 TGGTCCGAGAGGATAATCAGCCACACTGGGACTGAGACACGACCTAGGCTCCTACGGGAG 36554 Query 276 GCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCG 335 ||||||||||||||| || | |||| || ||| ||||| ||||| |||||||| | Sbjct 36553 GCAGCAGTGGGGAATTTTCCGCAATAAGCGAAAACCTGACTGAGCAATGCCGCGTGGAGG 36494 Query 336 ATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAG 393 ||||||| |||||||| || ||| | | | ||||| |||||||||| || | Sbjct 36493 TCGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGG 36434 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 || |||| ||||||||| ||||||||||||||||||| || ||| || ||||||| Sbjct 36433 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 36374 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| | | |||||||||| || |||||||| || ||||||| Sbjct 36373 TCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 36328 >seq45077 Length=170547 Score = 260 bits (288), Expect = 4e-67 Identities = 262/337 (78%), Gaps = 5/337 (1%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 ||||||| ||||| |||||||| |||||| |||| |||||| | | ||| |||| | Sbjct 58163 CCCGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTG 58222 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 || || ||||| |||||| ||| |||||||||||| || ||||| ||||| ||| Sbjct 58223 GTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGC 58282 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| ||| ||||||||| |||||| ||| |||||| |||||||| || Sbjct 58283 AGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAA 58342 Query 338 GA--AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAG 393 || || | | | | |||||||||| || | | | ||| ||||| | ||| ||| Sbjct 58343 GAAGAGTAATGCCGCTTGTAAAGCTCTTTCGTTGAGTGCGCGATCATGACAGGACTCGAG 58402 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 || |||||||||||||||| |||||||||||||||||||| ||| |||||| || ||| Sbjct 58403 GAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTC 58462 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | |||||| ||| |||||||||||| |||||| ||| Sbjct 58463 TTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 58498 >seq13256 Length=36008 Score = 143 bits (158), Expect = 8e-32 Identities = 178/239 (74%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||||| |||||| |||| |||| | | | ||| |||| | || || ||||| Sbjct 23786 TAGTTGGTCAGGTAAAGGCTGACCATGCCAATGATGCTTAGCTGGTCTTTTCGGATGATC 23727 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||||| || Sbjct 23726 AGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGG-GGCAGCAGTGGGGAATCTT 23668 Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA--AGGC-CTTCGGG 350 | ||||||||| |||||| ||| |||||| ||| |||| || || |||| | Sbjct 23667 GGACAATGGGCGAAAGCCCGATCCAGCAATATCGCATGAGTGAAGAAGAGGCAAGAAAGC 23608 Query 351 TCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGC 407 | |||||||||| || | | | ||| ||||| | ||| ||||| ||||||||||| Sbjct 23607 TTGTAAAGCTCTTTCGTTGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGC 23549 >seq14772 Length=65063 Score = 118 bits (130), Expect = 3e-24 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 172 GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGA 231 |||| | ||| ||| || ||||| ||| || | |||| ||||| || | || ||| ||| Sbjct 60558 GCTAATCGGTGAGGCAATAGCTTAACAAAGCAATGATCTGTAGCTGATCCGATAGGATGA 60499 Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291 || |||||| ||| ||||||||||| ||| ||||||||| ||||||||| ||| |||| Sbjct 60498 TCAGCCACACTGGGACTGAGACACGACCCAGACTCCTACGAGAGGCAGCAATGGAGAATT 60439 Query 292 TTGCACAATGGGCAAAAGCCTGA 314 || | | ||||| ||||||||| Sbjct 60438 TTTCGTAGTGGGCGAAAGCCTGA 60416 >seq11906 Length=25670 Score = 98.7 bits (108), Expect = 3e-18 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||| | ||| |||||||||| |||||||||||| ||| ||||| Sbjct 20893 TGAGAGGATGATCAGCCATACTGGGACTGAGACACAACCCAAACTCCTACAGGAAGCAGC 20834 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 | ||| |||| || | |||||| ||||||| | | ||||| |||| ||| | || Sbjct 20833 ACTGGAGAATTTTCCGTAATGGGTGAAAGCCTAACGGAGCAATGCCGTGTGGAGGTCAAA 20774 Query 341 GGCCTTCGGGTCGTAAA 357 |||| ||||||| || Sbjct 20773 GGCCCATGGGTCGTGAA 20757 >seq9290 Length=12825 Score = 98.7 bits (108), Expect = 3e-18 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||| | ||| |||||||||| |||||||||||| ||| ||||| Sbjct 8952 TGAGAGGATGATCAGCCATACTGGGACTGAGACACAACCCAAACTCCTACAGGAAGCAGC 9011 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 | ||| |||| || | |||||| ||||||| | | ||||| |||| ||| | || Sbjct 9012 ACTGGAGAATTTTCCGTAATGGGTGAAAGCCTAACGGAGCAATGCCGTGTGGAGGTCAAA 9071 Query 341 GGCCTTCGGGTCGTAAA 357 |||| ||||||| || Sbjct 9072 GGCCCATGGGTCGTGAA 9088 >seq14077 Length=48069 Score = 95.1 bits (104), Expect = 4e-17 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 197 CAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACG 256 ||||| || ||| |||||| | | |||| ||||| |||||| ||| ||||||| ||| Sbjct 10636 CAAGGAGATGATTAGTAGCTGGTCCGAGACTATGATCAGCCACACTGGGACTGAGAAACG 10577 Query 257 GTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 | ||| ||||||||||||||||| |||||||||| || Sbjct 10576 GCCCAGACTCCTACGGGAGGCAGTAGTGGGGAATTTT 10540 >seq10869 Length=24398 Score = 78.8 bits (86), Expect = 3e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 238 ACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 ||| |||||||||||||||| ||| |||||||||||||||||| ||||||||| || Sbjct 5679 ACACTGGAACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCGGTGGGGAATTTT 5734 >seq14713 Length=63018 Score = 75.2 bits (82), Expect = 3e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 238 ACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 ||| ||| |||||||||||| ||| |||||||||||||||||| ||||||||| || Sbjct 35594 ACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCGGTGGGGAATTTT 35539 >seq12917 Length=32918 Score = 75.2 bits (82), Expect = 3e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 || || ||||| |||||| ||| |||||||||||| || |||||| ||||| |||||||| Sbjct 17496 AGCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGAACTCCCACGGGGGGCAGCAG 17555 Query 283 TGGG 286 |||| Sbjct 17556 TGGG 17559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496924762112