Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq12481 264 3e-68 seq13482 259 1e-66 seq45077 217 4e-54 seq11764 86.0 2e-14 seq15849 77.0 8e-12 >seq12481 Length=43633 Score = 264 bits (292), Expect = 3e-68 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 38768 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 38827 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 38828 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 38887 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 38888 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACGAAGCTGGAGTACGGTAGGGGCA 38947 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 | |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 38948 GGGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 39007 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 39008 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 39067 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||| ||||||||| ||| |||| | | | | | || | Sbjct 39068 AGATACCCCAGTAGTCCTTGCCATAAACGATGGATATTAGGCG-CTGTGTGTATCGACCC 39126 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| | ||| |||||| ||||||| || ||||||||||| Sbjct 39127 GTGCAGTGTTGTAGCTAACGCATTAAGTATCCCGCCTGGGGAGTA 39171 >seq13482 Length=48067 Score = 259 bits (286), Expect = 1e-66 Identities = 262/341 (77%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 36437 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 36378 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 36377 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 36318 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 36317 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACGAAGCTGGAGTACGGTAGGGGCA 36258 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 | |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 36257 GGGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 36198 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 36197 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 36138 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||||||| ||||||| ||||||||||||| |||||||| Sbjct 36137 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 36097 >seq45077 Length=170547 Score = 217 bits (240), Expect = 4e-54 Identities = 254/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 58396 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 58455 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 58456 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 58515 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || | ||| Sbjct 58516 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGGGTGAGAC 58569 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || | || | | |||||| ||| Sbjct 58570 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAAATCTACGAAGGAACGCCAA 58629 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 58630 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 58689 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 58690 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 58729 >seq11764 Length=23863 Score = 86.0 bits (94), Expect = 2e-14 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139 ||||||||||| || |||||||| || |||||| | || ||| | | ||||||||| Sbjct 16266 TGGGCGTAAAGCGTCTGTAGGTGGCTTTATAAGTCCGCCGTCAAATCCCAGGGCTCAACC 16325 Query 140 CCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGT 199 | || || | |||||| | || |||| | | ||||||| | |||||| || Sbjct 16326 CTGGACAGGCGGTGGAAACTACGAAGCCGGAGTACGGTAGGGGCAGGGGGAATTTTCGGT 16385 Query 200 GTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 | |||||| ||||||||||| || | | |||||||| ||||| Sbjct 16386 GGAGCGGTAAAATGCGTAGAGATCGGAAAGAACACCAACTGCGAA 16430 >seq15849 Length=144940 Score = 77.0 bits (84), Expect = 8e-12 Identities = 147/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 198 GTGTAGCGGTGAAATGCGTAGATATT-AGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256 ||| |||| ||||||| ||||| || | | |||||| | ||| || || || || Sbjct 46402 GTGGAGCGATGAAATGTGTAGAGATCGAAAAAGAACACTAACGGCAAAAGCACTCTGTTG 46461 Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316 | ||| |||| ||||| | |||||| ||||| | || |||||| |||| | | Sbjct 46462 GGCTGACACTGGCACTGGGAGACGAAAGTTAGGGGATCGAATGGGATTAAATACACCAAT 46521 Query 317 AGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA-AGTGCTCCGGTGCCGC 375 ||||| ||||||| |||| |||||||| | | || || | | | | ||| | Sbjct 46522 AGTCCTATCCGTAAATGATGGATACTAGGCG-CTCTACGTATCGACTCGTACAGTGTTGT 46580 Query 376 AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || ||| ||||||| || ||||||||||| Sbjct 46581 AGCTAATGCATTAAGTATCCCGCCTGGGGAGTA 46613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202657501184