Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10081 439 5e-121 seq16010 286 7e-75 seq12324 284 2e-74 seq13714 271 1e-70 >seq10081 Length=34917 Score = 439 bits (486), Expect = 5e-121 Identities = 285/310 (92%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| | | ||||| || | |||| |||||||||| Sbjct 11839 GAACGAGACCTTAACCTGCTAAATAGCCCGTTCGGCTTTTGCTGATCGCTGGCTTCTTAG 11780 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| || || || ||| || |||||||||||||||||||||||||||||||||||| Sbjct 11779 AGGGACTGTCTGCGTCTAGCAGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 11720 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct 11719 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGTTTTTT-CCTTGGCC 11661 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 11660 GGAAGGTCTGGGTAATCTTGTGAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 11601 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| Sbjct 11600 GCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCATCAGCTCGCGTTGATTACGTCCCT 11541 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 11540 GCCCTTTGTA 11531 >seq16010 Length=173124 Score = 286 bits (316), Expect = 7e-75 Identities = 256/319 (80%), Gaps = 18/319 (6%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGG------TCGCCG--- 70 || |||||||| | |||||||| |||| | || || ||| |||| | Sbjct 56445 GAACGAGACCTCAGCCTGCTAACTAGCTATGC-------GGAGGGCTTCCTTCGCAGCTA 56497 Query 71 GCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| ||| | || | || | | ||||||||||||||||||||||||||| Sbjct 56498 GCTTCTTAGAGGGATTATGGCCTTCCAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 56557 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||| ||||||||||||||||||||||| |||||||||| | |||||||| || Sbjct 56558 GATGCCTTTAGATGTTCTGGGCCGCACGCGTGCTACACTGATGTATTCAACGAGTCTATA 56617 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 56618 GCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 56676 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||||||| |||||| ||||||||||||| ||||||||| ||||||| Sbjct 56677 GCAATTGTTGGTCTTCAACTAGGAATTCCTAGTAAGCGCGAGTCATCAGCTTGCGTTGAC 56736 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 56737 TACGTCCCTGCCCTTTGTA 56755 >seq12324 Length=50681 Score = 284 bits (314), Expect = 2e-74 Identities = 258/321 (80%), Gaps = 22/321 (7%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGG------TCGCCG--- 70 || |||||||| | |||||||| |||| | || || ||| |||| | Sbjct 12011 GAACGAGACCTCAGCCTGCTAACTAGCTATGC-------GGAGGGCATCCTTCGCAGCTA 11959 Query 71 GCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || | || | | ||||||||||||||||||| ||| ||| Sbjct 11958 GCTTCTTAGAGGGACTATGGCCTTCCAGGCCACGGAAGTTTGAGGCAATAACTGGTATGT 11899 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | |||||| | || Sbjct 11898 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGACTCTATA 11839 Query 190 ACCTTGGCCGGAAGGT--CTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 ||||||||| | || | |||||||||| | ||| | ||||| |||||||||| || Sbjct 11838 GCCTTGGCCG--ACGTACCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCA 11782 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||||| Sbjct 11781 TTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTG 11722 Query 308 ATTACGTCCCTGCCCTTTGTA 328 | ||||||||||||||||||| Sbjct 11721 ACTACGTCCCTGCCCTTTGTA 11701 >seq13714 Length=42945 Score = 271 bits (300), Expect = 1e-70 Identities = 253/319 (79%), Gaps = 18/319 (6%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGG------TCGCCG--- 70 || |||||||| | |||||||| |||| | || || ||| |||| | Sbjct 7598 GAACGAGACCTCAGCCTGCTAACTAGCTATGC-------GGAGGGCTTCCTTCGCAGCTA 7546 Query 71 GCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| ||| | || | || | | ||||||||||||||||||||||||||| Sbjct 7545 GCTTCTTAGAGGGATTATGGCCTTCCAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 7486 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||| ||||||||||||||||||||||| |||||||||| | |||||||| || Sbjct 7485 GATGCCTTTAGATGTTCTGGGCCGCACGCGTGCTACACTGATGTATTCAACGAGTCTATA 7426 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | ||||||| || | ||| | ||||| |||||||||| |||| Sbjct 7425 GCCTTGGCCGACAGGCCCGGGTAAT-TTTTGAAATTTCATCGTGATGGGGATAGATCATT 7367 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||| ||| ||||||||||||||| ||||||||||||| ||||||| | |||||||| Sbjct 7366 TTAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAACTCGCGTTGAC 7307 Query 310 TACGTCCCTGCCCTTTGTA 328 |||||||||||||| |||| Sbjct 7306 TACGTCCCTGCCCTATGTA 7288 Score = 149 bits (164), Expect = 1e-33 Identities = 138/174 (79%), Gaps = 17/174 (10%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGG------TCGCCG--- 70 || |||||||| | |||||||| |||| | || || ||| |||| | Sbjct 12233 GAACGAGACCTCAGCCTGCTAACTAGCTATGC-------GGAGGGCTTCCTTCGCAGCTA 12181 Query 71 GCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || | || | | ||||||||||||||||||||||||||| Sbjct 12180 GCTTCTTAGAGGGACTATGGCCTTCCAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 12121 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 12120 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAG 12067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946772926464