Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq38433 370 4e-100 seq15179 181 4e-43 seq15243 109 2e-21 seq16269 89.7 2e-15 >seq38433 Length=1672 Score = 370 bits (410), Expect = 4e-100 Identities = 376/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| ||||| | || || |||| ||||||||||||| |||||||| |||| Sbjct 1018 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 959 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||||||||||||||| Sbjct 958 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 899 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| Sbjct 898 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 839 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| |||||||||||| ||||| | | ||| | |||||||||||||||||| | Sbjct 838 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAATTCATCTCCGGGGGTAGAGCACTGTTTCG 779 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 || |||||||||| ||||||||||| || |||||||| ||||| | | | ||| Sbjct 778 GCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTAT 719 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | |||||| | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 718 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 661 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | | | ||||| | ||||| || || || ||||| Sbjct 660 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCCCAGACA 603 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| ||| Sbjct 602 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 544 Query 478 GAG 480 ||| Sbjct 543 GAG 541 >seq15179 Length=81045 Score = 181 bits (200), Expect = 4e-43 Identities = 322/459 (70%), Gaps = 27/459 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 52644 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 52703 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 52704 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 52763 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 52764 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 52821 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAACCA 269 | || | | ||||||||||| |||||||| ||||| |||||||| || Sbjct 52822 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGTCA---AACCTTACCAACCCC 52878 Query 270 TTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCT 323 | ||||||||||| | || ||| || ||| || || |||||||| Sbjct 52879 AGGGAAACTCCGAATACAGGCCTAGATCGTTTGTAC----AGACAGACTTTTTGGGTGCT 52934 Query 324 AAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGC 383 ||| ||| ||||||| || | || || | ||||||| ||| || | | | Sbjct 52935 AAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAGAAC 52994 Query 384 TAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAG 441 | ||| || || |||| |||| || | |||| | |||| || ||||||||||||| Sbjct 52995 TTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAG 53050 Query 442 CCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || ||| |||| |||||| |||||||| ||| || Sbjct 53051 CCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 53088 >seq15243 Length=83818 Score = 109 bits (120), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | |||||| || | ||| | | |||||| Sbjct 54967 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGAGAAACAGCCCGTATCACCAGCTA 55026 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| | | ||| | | || || || | ||| ||||||| |||| Sbjct 55027 AGGCCCCTAAATGACCGGTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 55084 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| || Sbjct 55085 GTTTGCCTAGAAGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 55143 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATGA 545 ||| || || | |||| |||| ||| ||||||||||||||| | | | Sbjct 55144 TTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCAGTGGGATGTAAAAAAACA 55202 Query 546 TCGGTAGGGGAGC 558 ||||||||||||| Sbjct 55203 TCGGTAGGGGAGC 55215 >seq16269 Length=636919 Score = 89.7 bits (98), Expect = 2e-15 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 375566 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 375625 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||||| || |||||||||||||| ||| |||||||| ||| Sbjct 375626 ACCAGGATGAAGCTTGGGTAAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 375685 Query 122 AGGGGAT 128 || |||| Sbjct 375686 AGCGGAT 375692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688838193152