Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq10081 771 0.0 seq14068 260 4e-67 seq10209 260 4e-67 seq12934 226 9e-57 seq13714 113 1e-22 seq12324 113 1e-22 seq15179 75.2 4e-11 >seq10081 Length=34917 Score = 771 bits (854), Expect = 0.0 Identities = 498/539 (92%), Gaps = 7/539 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 8304 CTTTTGTTCTACTCGAGATTTCTGTTCTCGATGAGTCCCC-TTAGGACACCTGCGTTATC 8362 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 8363 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 8422 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGT-CGGTGAAGACCAGTTCCGCTTCATTG 185 ||||| ||||||||| | |||| || ||| | || || |||| ||||| |||||| Sbjct 8423 AGCCCGTAAAGGACCTTGAAGCCAAAAGGTGGGACTGTTAATCCCAGCTCCGCCTCATTG 8482 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||| ||||||||||||||||||||||| |||||||| |||||||||| Sbjct 8483 AATAAGTAAAAAGACGATAAGGGTAGTGGTATTTCAACGGCGCCGAA---GCTCCCACTT 8539 Query 246 ATTCTACA-CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||| ||||| | ||| |||||||| ||| ||||||||||||||||||||||||| Sbjct 8540 ATTCTACACCCTCT-ATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCT 8598 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 8599 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 8658 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8659 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 8718 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8719 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 8778 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 8779 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 8837 >seq14068 Length=89903 Score = 260 bits (288), Expect = 4e-67 Identities = 167/181 (92%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||| ||||||| || ||||||||||||||||||| |||||||||||| ||||||||| Sbjct 74657 TCTTTTCCCGCTG--TCTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAGA 74600 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 74599 CAGGGACAGTGGGAATCTCGTTAATCAATTCATGCATGTCACTAATTAGATGACGAGACA 74540 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| Sbjct 74539 TTTGGCTACCTTAAGAGAGTCAGAGTTACTCCCACCGCTTACCCGCGCTTGGTTGAATTT 74480 Query 485 C 485 | Sbjct 74479 C 74479 >seq10209 Length=16522 Score = 260 bits (288), Expect = 4e-67 Identities = 167/181 (92%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||| ||||||| || ||||||||||||||||||| |||||||||||| ||||||||| Sbjct 13644 TCTTTTCCCGCTG--TCTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAGA 13701 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 13702 CAGGGACAGTGGGAATCTCGTTAATCAATTCATGCATGTCACTAATTAGATGACGAGACA 13761 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| Sbjct 13762 TTTGGCTACCTTAAGAGAGTCAGAGTTACTCCCACCGCTTACCCGCGCTTGGTTGAATTT 13821 Query 485 C 485 | Sbjct 13822 C 13822 >seq12934 Length=42260 Score = 226 bits (250), Expect = 9e-57 Identities = 144/156 (92%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| ||||||||||||||||| |||| | ||||||||| Sbjct 39346 GAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTTGCCGGA---GCTCCCACT 39402 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 39403 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 39462 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 ||||||||||||||||| |||||||||||||||||| Sbjct 39463 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTG 39498 Score = 161 bits (178), Expect = 3e-37 Identities = 120/139 (86%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 39078 CTTCTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 39137 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 39138 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 39197 Query 127 GGCCCGCGA-AGGACCTTA 144 |||||| | |||||||| Sbjct 39198 AGCCCGCAAGCGGACCTTA 39216 >seq13714 Length=42945 Score = 113 bits (124), Expect = 1e-22 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 3186 CCCGCGCTTGGTTGAATTTCTTCAATTTGACATTCAGAGCACTGGGCAGAAATCACATTG 3245 Query 526 CGTCAACATC 535 ||| | |||| Sbjct 3246 CGTTAGCATC 3255 >seq12324 Length=50681 Score = 113 bits (124), Expect = 1e-22 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 8631 CCCGCGCTTGGTTGAATTTCTTCAATTTGACATTCAGAGCACTGGGCAGAAATCACATTG 8690 Query 526 CGTCAACATC 535 ||| | |||| Sbjct 8691 CGTTAGCATC 8700 >seq15179 Length=81045 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 54182 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 54123 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| ||||||||||| | |||| Sbjct 54122 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTT 54077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634462721024