Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq15179 196 2e-47 seq15243 165 3e-38 seq11649 114 4e-23 seq14741 102 3e-19 seq15859 100 1e-18 seq11887 100 1e-18 seq10365 96.9 1e-17 >seq15179 Length=81045 Score = 196 bits (216), Expect = 2e-47 Identities = 341/490 (70%), Gaps = 27/490 (6%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| |||||| || ||| | | |||| ||||| | || || | Sbjct 54541 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCT--TT--C 54486 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 54485 AAGACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 54427 Query 121 TTAAACTACCCACCAGGCACTGTCCCC-----AACCCAGATCATGG-GCCAAGGTTAGAT 174 ||||||||||||| ||| |||||| |||||| | || || |||||| Sbjct 54426 ATAAACTACCCACCTCGCAGTGTCCCGCCTGGAACCCAATGCTCGGTGCGGCGGTTAGGC 54367 Query 175 ATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCAT 234 |||| | |||||||| ||||| | | || | | ||| | || Sbjct 54366 ATCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCAC 54316 Query 235 CATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | |||||||||||||||||| | | || || | | |||||||||| || Sbjct 54315 C------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTAAA 54262 Query 295 GGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 ||| | ||||||||| |||| |||| | | ||||||| || | | ||||| Sbjct 54261 GGTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATT 54202 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAAC 413 |||||||| | || |||||||| ||| ||||||||| |||||||||||||||| || Sbjct 54201 TCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTAC 54142 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||| |||||||||||||||||||||||||| |||| |||||| |||||||||||||| Sbjct 54141 TTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACTGG 54082 Query 474 GGCTTCAATT 483 |||||| ||| Sbjct 54081 GGCTTCCATT 54072 >seq15243 Length=83818 Score = 165 bits (182), Expect = 3e-38 Identities = 331/477 (69%), Gaps = 19/477 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 56760 TCGACTGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 56701 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 56700 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 56642 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 56641 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 56582 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 56581 TAGCTTTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--T 56525 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | | || || | || |||||| ||| | | ||| Sbjct 56524 CTTCGCCTTCCACCTAAGCTGCGTAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTA 56467 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTG-CA 350 ||| | | |||||||| |||| | || | | ||||||| || | || | Sbjct 56466 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACA-GACGTGTCT 56408 Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 56407 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 56349 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGT 466 |||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||| Sbjct 56348 GAACTTACCCGACAAGGAATTTCGCTACTTTAGGATCGTTATAGTTACGACTGCCGT 56292 >seq11649 Length=40817 Score = 114 bits (126), Expect = 4e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| ||| ||||||||| |||||| ||||||||| ||||| ||| |||||||| Sbjct 29434 GAGACAGCGGGGCAGTCGTTACACCATTCATGCAGGTCGCTACTTATGCGAAAAGGAATT 29493 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||| ||| |||||| ||||||| ||| |||||| Sbjct 29494 TCGCTACCTTAGGACAATTAGAGTTACGGTCGCCGTTAACTAGGGCTT 29541 >seq14741 Length=65290 Score = 102 bits (112), Expect = 3e-19 Identities = 81/95 (85%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 19890 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 19832 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 ||||||||||||||||||||||||||||||||||| Sbjct 19831 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 19797 >seq15859 Length=140313 Score = 100 bits (110), Expect = 1e-18 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||| | || ||||||||| |||||| |||| |||| ||||| ||| |||||||| Sbjct 83183 GAGACAACGAGGCAGTCGTTACACCATTCATGCAAGTCGCTACTTATGCGAAAAGGAATT 83242 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||| | ||| |||||| ||||||| ||| ||||||| ||| Sbjct 83243 TCGCTACCTTAGAACAATTAGAGTTACGGTCGCCGTTAACTAGGGCTTCCATT 83295 >seq11887 Length=32656 Score = 100 bits (110), Expect = 1e-18 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||| | || ||||||||| |||||| |||| |||| ||||| ||| |||||||| Sbjct 16446 GAGACAACGAGGCAGTCGTTACACCATTCATGCAAGTCGCTACTTATGCGAAAAGGAATT 16505 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||| | ||| |||||| ||||||| ||| ||||||| ||| Sbjct 16506 TCGCTACCTTAGAACAATTAGAGTTACGGTCGCCGTTAACTAGGGCTTCCATT 16558 >seq10365 Length=17182 Score = 96.9 bits (106), Expect = 1e-17 Identities = 78/92 (85%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 8 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 66 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTA 441 |||||||||||||||||||||||||||||||| Sbjct 67 GAACTTACCCGACAAGGAATTTCGCTACCTTA 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701632421888