Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq12481 118 2e-24 seq45077 116 8e-24 seq13256 91.5 3e-16 seq13482 87.8 4e-15 seq10869 75.2 2e-11 >seq12481 Length=43633 Score = 118 bits (130), Expect = 2e-24 Identities = 193/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 38804 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 38756 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 38755 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCGACCTCCACGC 38703 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 38702 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 38643 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || |||| || Sbjct 38642 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACAAGCTATTGAT 38583 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| | || || | || |||| ||||| Sbjct 38582 CATCGCCTTGGTAAGTTATTGCCTCACCAACTAGCTAAT 38544 >seq45077 Length=170547 Score = 116 bits (128), Expect = 8e-24 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAAC-CTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 ||||| ||||||| | | | || |||| || |||||| | | ||||| || | || Sbjct 58371 AAAGAGCTTTACAAGCGGCATTACTCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT 58312 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||| ||||| |||||||||| ||||| ||||| || ||||||||||| Sbjct 58311 TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAG 58252 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||| ||| | ||| |||| | |||| ||| ||| || Sbjct 58251 TCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTT 58192 Query 261 ACCCCGCCTACTACCTAAT 279 ||| || |||||||||| Sbjct 58191 ACCTGACCAACTACCTAAT 58173 >seq13256 Length=36008 Score = 91.5 bits (100), Expect = 3e-16 Identities = 123/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 106 CTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCAC 165 |||| || ||| || | | ||||| || | || ||| |||||| |||| ||||| ||| Sbjct 23620 CTTCTTCACTCATGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCAC 23679 Query 166 TGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTC 225 ||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 23680 TGCTGCC-CCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAA 23738 Query 226 AGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACC 275 ||| | ||| |||| | ||| ||| ||| ||||| || |||||| Sbjct 23739 AGACCAGCTAAGCATCATTGGCATGGTCAGCCTTTACCTGACCAACTACC 23788 >seq13482 Length=48067 Score = 87.8 bits (96), Expect = 4e-15 Identities = 186/279 (67%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 36401 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 36449 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 36450 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGG-CCTTCGACCTCCACGC 36502 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| | ||| |||| || ||||| |||||||||||||||||| Sbjct 36503 GGCATTGCTCAGTCAGGTTTTCGCTTATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 36562 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| | | ||||||||||| ||| ||||| || ||||||| || | ||| || Sbjct 36563 GAGCCTAGGTCGTGTCTCAGTCCCAGTGTGGCTGATTATCCTCTCGGACCAGCTACTGAT 36622 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || || |||| ||||| Sbjct 36623 CATCGCCTTGGTAAGCTATTGCCTTACCAACTAGCTAAT 36661 >seq10869 Length=24398 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 154 AATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGT 209 || ||||| ||| |||||||||||||||||| ||| |||||||||||||||| ||| Sbjct 5734 AAAATTCCCCACCGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTTCCAGTGT 5679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068318099456