Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq10081 152 8e-35 seq16013 111 3e-22 seq16010 102 1e-19 >seq10081 Length=34917 Score = 152 bits (168), Expect = 8e-35 Identities = 209/279 (75%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| ||||| || | |||| | Sbjct 7979 GTACGAGAGGAACCGTTCA-TTCAGA-TATTTGGTATTTGCGCCTGTCCGATCGGGCAAT 7922 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| | Sbjct 7921 GGCGCGAAGCTATCATCTGCTGGATTATGGCTGAACGCCTCTAAGCCAGAATCCGTGCTA 7862 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAG-GCTTCGGCCCCGA 178 ||| | |||| | ||| |||||| ||| | | ||||| |||| | | || Sbjct 7861 GAA-ACGATGATGTTGGTCCCGCACATACGAGTTGTGTTGAAATAGAGCTTTGCTCGTGA 7803 Query 179 ACCTTAGCAGGCCGGCAACGGGCG-TCCCGCGGAAGCGC-GGGGCGCTCAGCTGGCGGAT 236 ||| | | || |||| || || || |||||| || ||||| | | || || || Sbjct 7802 ACCAAATCTGGTCGGC-TGGGCCGTTCGAGCGGAAATGCTTGGGCGGTTTGTTGACGAAT 7744 Query 237 TGCAATT-TCACCATGCGCAGGGATAAATCCTTTGCAGA 274 ||||||| ||| ||| || ||| | ||||||||||||| Sbjct 7743 TGCAATTATCA-TATGGGCGGGGGTGAATCCTTTGCAGA 7706 >seq16013 Length=170587 Score = 111 bits (122), Expect = 3e-22 Identities = 100/123 (81%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | |||| || | ||| || ||| || |||| Sbjct 85535 GTACGAGAGGAACCGTTGA-TTCACAG-AATTTGTCATCGCGCTTGGTTGAAAAGCCAGT 85478 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| Sbjct 85477 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCCA 85418 Query 121 GAA 123 ||| Sbjct 85417 GAA 85415 Score = 102 bits (112), Expect = 1e-19 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || | | | ||||||| | ||| || ||| || |||| Sbjct 89229 GTACGAGAGGAACCGTTGATT--AACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 89172 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| ||||| |||||||||| ||||||| |||| Sbjct 89171 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAATGCCTCTAAGTTAGAATCCGGGCCA 89112 Query 121 GAA 123 ||| Sbjct 89111 GAA 89109 >seq16010 Length=173124 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 52380 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 52323 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||| | |||||||||||| ||||| |||||||||| ||||||| |||| Sbjct 52322 CGCGCGAAGCTACCGTGTGCTGGATTATGACTGAAGGCCTCTAAGTTAGAATCCGGGCCA 52263 Query 121 GAA 123 ||| Sbjct 52262 GAA 52260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818842181632