Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10081 749 0.0 seq13714 627 3e-177 seq14481 572 5e-161 seq16010 544 2e-152 seq16013 524 2e-146 seq8331 226 9e-57 seq16244 147 7e-33 seq2335 113 1e-22 >seq10081 Length=34917 Score = 749 bits (830), Expect = 0.0 Identities = 474/508 (93%), Gaps = 4/508 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| Sbjct 12645 GTACTCATTCCAATTATAAGACCCAAAAGAGCCCTATATCGTTATTTATTGTCACTACCT 12704 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12705 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 12764 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 12765 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 12824 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 12825 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCA 12884 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA-GGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||| Sbjct 12885 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCACCAAGGGAGCGGCGAGCCGCGTTGG 12944 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTC 357 |||||||||||||||||||||||||||| |||||||||| || | |||||||||||||| Sbjct 12945 TTTTTTATCTAATAAATACACCCCTTCCAGAAGTCGGGGCTTGATTGCATGTATTAGCTC 13004 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 |||||||||||| ||||||||||||| || | || ||||||||||| ||||||||||||| Sbjct 13005 TAGAATTACCACAGTTATCCATGTAGCAAAGCACCATCAAATAAACTATAACTGATTTAA 13064 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATC 476 |||||||||||||||||||| ||| | | ||| ||||||||||||||||||||||||||| Sbjct 13065 TGAGCCATTCGCAGTTTCACAGTACAAATTTGTTTATACTTAGACATGCATGGCTTAATC 13124 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 13125 TTTGAGACAAGCATATGACTACTGGCAG 13152 >seq13714 Length=42945 Score = 627 bits (694), Expect = 3e-177 Identities = 452/513 (88%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 8404 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 8462 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8463 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 8522 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 8523 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 8582 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 8583 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCG 8642 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | |||||| |||||| ||| |||||| |||||||| || |||| || ||| | Sbjct 8643 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCG 8700 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 8701 CGTTGACCTTTTATCTAATAAATGCAGCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 8760 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| |||||| |||||| |||| |||||||| Sbjct 8761 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGGTACCATCAAACAAACTATAACTGA 8819 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 8820 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 8879 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 8880 TAATCTTTGAGACAAGCATATGACTACTGGCAG 8912 >seq14481 Length=56650 Score = 572 bits (634), Expect = 5e-161 Identities = 433/500 (87%), Gaps = 14/500 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 3936 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 3878 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 3877 CCCCGTGTCAGGATTGGGTAATTTGCGCGCTTGCTGCCTTCCTTGGATGTGGTAGCTGTT 3818 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||| Sbjct 3817 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCTCCGTCACCCGTCACTACCATGGTA 3758 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| Sbjct 3757 GGCCACTATCCTACCATCGAAAGTTGATAGGGTAGAAATTTGAATGATGCGTCGCCGGCG 3698 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | |||||| |||||| ||| ||||||| |||||||| || |||| || ||| | Sbjct 3697 CAAAGGCCGTGCGATCCGTCAAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCG 3640 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||| ||||||| || ||||||| |||||||||||| | ||| ||||| Sbjct 3639 CGTTGACCTTTTATCAAATAAATGCAGCCCTTCCACAAGTCGGGGTTTGTTGCACGTATT 3580 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| | |||| |||||| |||| |||||||| Sbjct 3579 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CATGTACCATCAAACAAACTATAACTGA 3521 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||| ||||| || | ||| | | ||||||| |||||||||||| Sbjct 3520 TTTAATGAGCCATTCGCAG-TTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 3462 Query 472 TAATCTTTGAGACAAGCATA 491 |||||||||||||||||||| Sbjct 3461 TAATCTTTGAGACAAGCATA 3442 Score = 259 bits (286), Expect = 1e-66 Identities = 217/260 (83%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAGGGC--GTTGGTTTTTTA 306 || ||| |||||| |||||||| || |||| || ||| | |||| ||||| Sbjct 831 ATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCACGTTGACCTTTTA 774 Query 307 TCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 |||||||||| || ||||||| ||||||||||||| | ||| |||||||||||||||||| Sbjct 773 TCTAATAAATGCAGCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTA 714 Query 366 CCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 | |||||||||| |||| | ||||| |||||| |||| ||||||||||||||||||||| Sbjct 713 CTACGGTTATCCGAGTAGCA-GGTACCATCAAACAAACTATAACTGATTTAATGAGCCAT 655 Query 426 TCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||| || | ||| || ||||||| ||||||||||||||||||||||||| Sbjct 654 TCGCAGTTTCAGAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGAC 595 Query 485 AAGCATATGACTACTGGCAG 504 |||||||||||||||||||| Sbjct 594 AAGCATATGACTACTGGCAG 575 >seq16010 Length=173124 Score = 544 bits (602), Expect = 2e-152 Identities = 434/512 (85%), Gaps = 14/512 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 55639 GTACTCATTCCAATTACCAGACTGAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 55581 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 55580 CCCCGTGTCAGGATTGGGTAACTTGCGCGCCTGCTGCCTTCCTTGGATATGGTAGCCGTT 55521 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| ||||||||| |||||||||||| ||| |||| ||| | | | |||||||| Sbjct 55520 TCTCAGGCCCCCTCTCCGAAATCGAACCCTAGTTCTCCGTCACCTG-TCACCCCATGGTA 55462 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| ||||||||||||||||||||||||||||||||||||||||||| | || ||| Sbjct 55461 GGCTACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGAAG 55402 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | |||||| |||||| ||| |||||| |||| ||| | |||| || ||| | Sbjct 55401 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAGTCATTA--GAGCAACGGGCAAAGCCCG 55344 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||||||||||| || |||||| |||| |||||||| | ||| ||||| Sbjct 55343 CGTTGACCTTTTATCTAATAAATGCAGTCCTTCCAGAAGGCGGGGTTTGTTGCACGTATT 55284 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||||||||||||| |||||||||| |||| |||||| |||||| |||| |||||| | Sbjct 55283 AGCTCTAGAATTAATACGGTTATCCGAGTAG-CAGGTACCATCAAACAAACTATAACTAA 55225 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 55224 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 55165 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||||||||| Sbjct 55164 TAATCTTTGAGACAAGCATATGACTACTGGCA 55133 >seq16013 Length=170587 Score = 524 bits (580), Expect = 2e-146 Identities = 423/501 (84%), Gaps = 14/501 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 93989 GTACTCATTCCAATTACCAGACTGAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 93931 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 93930 CCCCGTGTCAGGATTGGGTAACTTGCGCGCCTGCTGCCTTCCTTGGATATGGTAGCCGTT 93871 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| ||||||||| |||||||||||| ||| |||| ||| | | | |||||||| Sbjct 93870 TCTCAGGCCCCCTCTCCGAAATCGAACCCTAGTTCTCCGTCACCTG-TCACCCCATGGTA 93812 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| ||||||||||||||||||||||||||||||||||||||||||| | || ||| Sbjct 93811 GGCTACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCACCGAAG 93752 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GG 293 | |||||| |||||| ||| |||||| |||| ||| | |||| || ||| | Sbjct 93751 CAAAGGCCGTGCGATCCGTCGAGTTATCATGAGTCATTA--GAGCAACGGGCAAAGCCCG 93694 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||||||||||| || |||||| |||| |||||||| | ||| ||||| Sbjct 93693 CGTTGACCTTTTATCTAATAAATGCAGTCCTTCCAGAAGGCGGGGTTTGTTGCACGTATT 93634 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 ||||||||||||| |||||||||| |||| |||||| |||||| |||| |||||| | Sbjct 93633 AGCTCTAGAATTAATACGGTTATCCGAGTAG-CAGGTACCATCAAACAAACTATAACTAA 93575 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 93574 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 93515 Query 472 TAATCTTTGAGACAAGCATAT 492 ||||||||||||||||||||| Sbjct 93514 TAATCTTTGAGACAAGCATAT 93494 Score = 163 bits (180), Expect = 9e-38 Identities = 124/144 (86%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 || || |||||||||| |||| | ||||| |||||| |||| |||||| |||||||||| Sbjct 98607 ATCACTACGGTTATCCGAGTAGCA-GGTACCATCAAACAAACTATAACTAATTTAATGAG 98665 Query 422 CCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTG 480 ||| |||||||||||| || ||| || ||||||| ||||||||||||||||||||| Sbjct 98666 CCAATCGCAGTTTCACAGTCAGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTG 98725 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 98726 AGACAAGCATATGACTACTGGCAG 98749 >seq8331 Length=10627 Score = 226 bits (250), Expect = 9e-57 Identities = 158/177 (89%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 329 AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGG 388 |||||||||||| | ||| ||||||||||||||||||| |||||||||| |||| | || Sbjct 2971 AAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCA-GG 3029 Query 389 TACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG 448 ||| |||||| |||| ||||||||||||||||||||||||||||||||| || | ||| Sbjct 3030 TACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTA 3089 Query 449 CTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3090 GTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 3146 >seq16244 Length=307546 Score = 147 bits (162), Expect = 7e-33 Identities = 101/113 (89%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT- 451 |||||| |||| ||||||||||||||||||||||||||||||||| | | ||| | Sbjct 173995 ATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAATCTGAATTAGTAC 173936 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173935 ATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 173883 >seq2335 Length=3590 Score = 113 bits (124), Expect = 1e-22 Identities = 76/84 (90%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 3582 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 3524 Query 61 CCCCGTGTCGGGATTGGGTAATTT 84 ||||||||| |||||||||||||| Sbjct 3523 CCCCGTGTCAGGATTGGGTAATTT 3500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509718990848