Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq16048 206 2e-48 seq15946 203 3e-47 seq11586 203 3e-47 >seq16048 Length=246288 Score = 206 bits (228), Expect = 2e-48 Identities = 596/893 (67%), Gaps = 33/893 (4%) Strand=Plus/Plus Query 61054 CGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 |||||| |||| |||||| || | || | | || ||| |||||||| || || || Sbjct 203927 CGTTTCTGTAT-GTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGA 203985 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG-AGC 61171 ||| || || ||||||| || || |||||| | || ||||| | | ||||| | | Sbjct 203986 AGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAAC 204045 Query 61172 G---TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 | || | ||| || ||||| |||||||| | || || | || ||||||||||| | Sbjct 204046 GACCTTGACCGA-CGATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCAT 204104 Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 | || || || || ||||| | | || ||| | ||||| | || | | | Sbjct 204105 CTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCG 204164 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | |||||| || ||||| || |||||||| || |||||| | || |||||||||||| Sbjct 204165 AAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACT 204224 Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCG--GAACGTGAACGATTGTTCAATGC 61406 || | | || ||||| || ||| | || ||| ||| ||||| ||| Sbjct 204225 CGCTTTTGCTTGAGACGTATATTCAGGATTCGTCGTTGAAGTCGAAT--TTGTTTCGTGC 204282 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG 61466 |||||||||| || ||||||||| ||| ||||||||||| || |||||| | Sbjct 204283 TGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGG 204342 Query 61467 TACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT-- 61523 | | | || |||| ||| | |||| | || |||||| |||||||| |||| Sbjct 204343 TTCTGAG---ACGTTTGCTGAGAGGATTA-TCGCTTTTGCGTGTGTCGAGGGGATATTCT 204398 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 |||| | ||| | ||| || || |||||| | || || |||||||||||||| || | Sbjct 204399 TTTCTG-GGAGTTTCTGC-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTT 204456 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGT-T 61641 |||||| ||||| | || || || |||||||| | || || || ||||| ||| | Sbjct 204457 AACCTTCTCAAATGAACTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTGTCT 204516 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || || | |||| | || ||| | |||||||||||| ||||||||| Sbjct 204517 TTTGTACT----CGCTGT-TGAAGAAGAAAGTGAGCGAGGAGCGTGTGAAGGAGATTGTT 204571 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| || || ||| ||| | |||||| | ||| | | | | Sbjct 204572 CGAGAGGCGGTGGAGATTGAGAGGGAGTTTGTCTGTGACGCGCTCCCCTGCGCGTTAGTT 204631 Query 61762 GGCATGAATTGTGGACTAAT--GTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT-G 61818 || ||||| | | |||| ||||| || || || ||||| || ||| | |||| | Sbjct 204632 GGGATGAACGGGGATTTAATGAGTCGC--TACATCGAGTTTGTGGCAGACAGGTTGTTGG 204689 Query 61819 GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 || |||| | || ||| ||| | || ||||| ||||||| ||||| || Sbjct 204690 GTGCGCTTGGTTGTGGGAAGGA-GTATGGTGTGACGAACCCGTTTGATTGGATGGAGTTG 204748 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||||| || | || ||||| || || || ||||| ||||| || || ||||| Sbjct 204749 ATTTCGTTGCAGGGGAAGACAAACTTCTTTGAGAAGCGTGTCGGGGAGTATCA 204801 >seq15946 Length=172941 Score = 203 bits (224), Expect = 3e-47 Identities = 595/893 (67%), Gaps = 33/893 (4%) Strand=Plus/Plus Query 61054 CGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 |||||| |||| |||||| || | || | | || ||| |||||||| || || || Sbjct 57992 CGTTTCTGTAT-GTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGA 58050 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG-AGC 61171 ||| || || ||||||| || || |||||| | || ||||| | | ||||| | | Sbjct 58051 AGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAAC 58110 Query 61172 G---TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 | || | ||| | ||||| |||||||| | || || | || ||||||||||| | Sbjct 58111 GACCTTGACCGA-CAATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCAT 58169 Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 | || || || || ||||| | | || ||| | ||||| | || | | | Sbjct 58170 CTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCG 58229 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | |||||| || ||||| || |||||||| || |||||| | || |||||||||||| Sbjct 58230 AAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACT 58289 Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCG--GAACGTGAACGATTGTTCAATGC 61406 || | | || ||||| || ||| | || ||| ||| ||||| ||| Sbjct 58290 CGCTTTTGCTTGAGACGTATATTCAGGATTCGTCGTTGAAGTCGAAT--TTGTTTCGTGC 58347 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG 61466 |||||||||| || ||||||||| ||| ||||||||||| || |||||| | Sbjct 58348 TGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGG 58407 Query 61467 TACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT-- 61523 | | | || |||| ||| | |||| | || |||||| |||||||| |||| Sbjct 58408 TTCTGAG---ACGTTTGCTGAGAGGATTA-TCGCTTTTGCGTGTGTCGAGGGGATATTCT 58463 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 |||| | ||| | ||| || || |||||| | || || |||||||||||||| || | Sbjct 58464 TTTCTG-GGAGTTTCTGC-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTT 58521 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGT-T 61641 |||||| ||||| | || || || |||||||| | || || || ||||| ||| | Sbjct 58522 AACCTTCTCAAATGAACTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTGTCT 58581 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || || | |||| | || ||| | |||||||||||| ||||||||| Sbjct 58582 TTTGTACT----CGCTGT-TGAAGAAGAAAGTGAGCGAGGAGCGTGTGAAGGAGATTGTT 58636 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| || || ||| ||| | |||||| | ||| | | | | Sbjct 58637 CGAGAGGCGGTGGAGATTGAGAGGGAGTTTGTCTGTGACGCGCTCCCCTGCGCGTTAGTT 58696 Query 61762 GGCATGAATTGTGGACTAAT--GTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT-G 61818 || ||||| | | |||| ||||| || || || ||||| || ||| | |||| | Sbjct 58697 GGGATGAACGGGGATTTAATGAGTCGC--TACATCGAGTTTGTGGCAGACAGGTTGTTGG 58754 Query 61819 GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 || |||| | || ||| ||| | || ||||| ||||||| ||||| || Sbjct 58755 GTGCGCTTGGTTGTGGGAAGGA-GTATGGTGTGACGAACCCGTTTGATTGGATGGAGTTG 58813 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||||| || | || ||||| || || || ||||| ||||| || || ||||| Sbjct 58814 ATTTCGTTGCAGGGGAAGACAAACTTCTTTGAGAAGCGTGTCGGGGAGTATCA 58866 >seq11586 Length=26096 Score = 203 bits (224), Expect = 3e-47 Identities = 595/893 (67%), Gaps = 33/893 (4%) Strand=Plus/Plus Query 61054 CGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGA 61112 |||||| |||| |||||| || | || | | || ||| |||||||| || || || Sbjct 3750 CGTTTCTGTAT-GTTCCCAATTCATTACCCGCAAATCTGGGAAATGTACAAGAAAGCCGA 3808 Query 61113 AGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG-AGC 61171 ||| || || ||||||| || || |||||| | || ||||| | | ||||| | | Sbjct 3809 AGCATCGTTTTGGACGGCTGAAGAAGTCGATCTTTCACAAGACTTACGTCACTGGTCAAC 3868 Query 61172 G---TTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 | || | ||| | ||||| |||||||| | || || | || ||||||||||| | Sbjct 3869 GACCTTGACCGA-CAATGAACGCCATTTCATCACTCACGTTCTCGCCTTCTTTGCCGCAT 3927 Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 | || || || || ||||| | | || ||| | ||||| | || | | | Sbjct 3928 CTGATGGGATTGTTCTCGAGAACCTCGCGTGTCGGTTCATGAAGGAGATTCAGCTCCCCG 3987 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 | |||||| || ||||| || |||||||| || |||||| | || |||||||||||| Sbjct 3988 AAGCGCGTGCGTTTTACGGGTTTCAGATTGCGATTGAGAATATTCATTCGGAGATGTACT 4047 Query 61349 GTGTTCTCATCGATACGTACATCAGGGAGCGGGCG--GAACGTGAACGATTGTTCAATGC 61406 || | | || ||||| || ||| | || ||| ||| ||||| ||| Sbjct 4048 CGCTTTTGCTTGAGACGTATATTCAGGATTCGTCGTTGAAGTCGAAT--TTGTTTCGTGC 4105 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG 61466 |||||||||| || ||||||||| ||| ||||||||||| || |||||| | Sbjct 4106 TGTCGAGACGATTCCTGCGGTGAAGAAGAAGGCGGATTGGGCGTTGCGTTGGATTGATGG 4165 Query 61467 TACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT-- 61523 | | | || |||| ||| | |||| | || |||||| |||||||| |||| Sbjct 4166 TTCTGAG---ACGTTTGCTGAGAGGATTA-TCGCTTTTGCGTGTGTCGAGGGGATATTCT 4221 Query 61524 TTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCT 61583 |||| | ||| | ||| || || |||||| | || || |||||||||||||| || | Sbjct 4222 TTTCTG-GGAGTTTCTGC-GCGATTTTTTGGCTTAAAAAGCGTGGACTTATGCCGGGGTT 4279 Query 61584 GACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGT-T 61641 |||||| ||||| | || || || |||||||| | || || || ||||| ||| | Sbjct 4280 AACCTTCTCAAATGAACTCATTTCTCGTGACGAGGGTCTTCACTGCGACTTTGCTTGTCT 4339 Query 61642 TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTT 61701 || || | |||| | || ||| | |||||||||||| ||||||||| Sbjct 4340 TTTGTACT----CGCTGT-TGAAGAAGAAAGTGAGCGAGGAGCGTGTGAAGGAGATTGTT 4394 Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761 || |||||||| || || ||| ||| | |||||| | ||| | | | | Sbjct 4395 CGAGAGGCGGTGGAGATTGAGAGGGAGTTTGTCTGTGACGCGCTCCCCTGCGCGTTAGTT 4454 Query 61762 GGCATGAATTGTGGACTAAT--GTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT-G 61818 || ||||| | | |||| ||||| || || || ||||| || ||| | |||| | Sbjct 4455 GGGATGAACGGGGATTTAATGAGTCGC--TACATCGAGTTTGTGGCAGACAGGTTGTTGG 4512 Query 61819 GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 || |||| | || ||| ||| | || ||||| ||||||| ||||| || Sbjct 4513 GTGCGCTTGGTTGTGGGAAGGA-GTATGGTGTGACGAACCCGTTTGATTGGATGGAGTTG 4571 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||||| || | || ||||| || || || ||||| ||||| || || ||||| Sbjct 4572 ATTTCGTTGCAGGGGAAGACAAACTTCTTTGAGAAGCGTGTCGGGGAGTATCA 4624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397349532408320