Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq11475 513 2e-140 seq15224 266 4e-66 seq8938 176 6e-39 seq10333 129 7e-25 seq15824 127 3e-24 seq15982 89.7 7e-13 seq13902 86.0 8e-12 seq14024 82.4 1e-10 >seq11475 Length=22225 Score = 513 bits (568), Expect = 2e-140 Identities = 726/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | |||| || || || ||||| ||||||||||| Sbjct 12883 TTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 12824 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||||||| |||| | || || ||| |||| || ||||||||| Sbjct 12823 CTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTT 12764 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || ||||| || || || | || ||| || | || || ||| ||||| | Sbjct 12763 GTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTT 12705 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || || || || || || |||||| || | | | || ||| | | | || ||||| Sbjct 12704 AACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGG 12645 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 ||||||| | ||||||||||| | ||| ||| | || || || ||| ||||||| Sbjct 12644 TCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGT 12585 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345 || || || || ||||||| ||||| || || ||| | || || || ||||| || || Sbjct 12584 TGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCG 12525 Query 190346 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 ||| || | | || ||||| ||||| || || ||||| || || || |||||||||| Sbjct 12524 ATCTGTTCAAT-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTG 12466 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || || || || || || || || |||||||| |||||||||| ||||| || | Sbjct 12465 TTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 12406 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 |||| ||||| || || || ||| ||||||| || || || || ||||| |||||||||| Sbjct 12405 GTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGA 12346 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 |||| || || |||||||| ||||| ||| | |||| | || || || | || || | Sbjct 12345 ACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTC 12286 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||||| || ||||| |||||||| | || |||||||| ||||| || || | Sbjct 12285 ATGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGG 12226 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || || | || |||| ||||| || ||||| |||||||| || |||||||| |||| Sbjct 12225 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGT 12166 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 | ||||| ||||| ||||| || ||||| | ||||| |||||||||||| | |||| Sbjct 12165 CCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 12106 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824 | || || | ||| | |||| | | | || | | ||||| || | ||||| | Sbjct 12105 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTAC 12046 Query 190825 GTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTT 190884 |||| |||||||| || |||||||| || | ||||| |||||||| || || ||||||| Sbjct 12045 GTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTT 11986 Query 190885 TTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATC 190944 | ||||| |||||||| || || ||||||||| ||||| | ||| |||| || |||| Sbjct 11985 TCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 11926 Query 190945 AACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 | || ||||| || || |||| || || || || | || | || |||||||| Sbjct 11925 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871 >seq15224 Length=172684 Score = 266 bits (294), Expect = 4e-66 Identities = 302/405 (75%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 ||| || || || || |||||||| || | || || || || ||||||| ||||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGT 189356 ||| || ||||| | ||||| || || || ||| || ||||||| |||| |||| Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 189357 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGT 189416 ||||| || |||||||||||||| |||||||| || |||||| |||| || || ||||| Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 189417 CTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCG 189476 ||||| || || || || || ||||||||||| | || || ||| || || | Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 189477 TGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAAC 189536 |||||||| |||| || || || | ||||||| ||||| ||||| |||||||| Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 189537 GTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTT 189596 || || ||||| |||||||||| ||||| ||||| | |||||||||||||| || Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 189597 CAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGT 189641 |||||| |||||||| | ||||||||| | ||||| ||||| || Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 136 bits (150), Expect = 5e-27 Identities = 139/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 189508 GGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTC 189567 ||||||| ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 189568 GGTCGTCTTATCTTC------CAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 189621 ||||| | |||||| |||||||| |||||||| || ||||| | |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 189622 TTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATG 189681 ||| | ||||| ||||| || || ||||| |||||||| || | || | ||||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 189682 GC 189683 || Sbjct 89914 GC 89915 >seq8938 Length=12132 Score = 176 bits (194), Expect = 6e-39 Identities = 234/324 (72%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 190684 TCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGT 190743 |||| || |||||||| ||||| ||| | ||||| ||||| || ||||| || |||| Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981 Query 190744 TGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTA 190803 | |||||||||||| | ||||| || || | | | | |||| | | | || | Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921 Query 190804 TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAG--AGATCAGAGCAGC 190861 | ||||| || | ||||| ||||| |||||||| || ||||||| | || | ||||| Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861 Query 190862 AGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCG 190921 |||||||| || || |||||||| ||||| |||||||| || || ||||||||| |||| Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801 Query 190922 TTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATT 190981 | | ||| ||| || ||||| || ||||| || || |||| || || || || | Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 1741 Query 190982 GCCAAGAGGCAACGCTCTGTGATA 191005 || | || |||||||| | ||| Sbjct 1740 ACCCCGTGGAAACGCTCTTTAATA 1717 >seq10333 Length=16991 Score = 129 bits (142), Expect = 7e-25 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 190547 TGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATAC 190606 ||| ||| | |||| | || || || | || || ||||||| || ||||| ||||| Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705 Query 190607 TTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGA 190666 ||| | || |||||||| ||||| || || || || || | || |||| || Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765 Query 190667 AGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTT 190726 ||| || ||||| |||||||| || |||||||| ||||| ||||| ||||| ||||| || Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825 Query 190727 CAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGA 190785 ||||| | ||||| |||||||||||| | ||||| || || | ||| | |||| Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGA 6884 >seq15824 Length=139560 Score = 127 bits (140), Expect = 3e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 190359 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTC 190418 || ||||| ||||| || || ||||| || || || |||||||||||| || || || Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242 Query 190419 ATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATC 190478 || || || || | |||||| |||||||||| ||||| || ||||| ||||| || Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182 Query 190479 TTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATG 190538 || || ||| |||| || || || || || ||||| ||||||| |||| | || || ||| Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122 Query 190539 ATGGG 190543 ||||| Sbjct 61121 ATGGG 61117 >seq15982 Length=164312 Score = 89.7 bits (98), Expect = 7e-13 Identities = 184/270 (68%), Gaps = 13/270 (5%) Strand=Plus/Plus Query 190740 TGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGT 190799 || || |||||||||||| | ||||| || | | ||| | |||| | | | | Sbjct 21389 TGATTACATTTCTTTATGTTGTTTGTACCAATAACCGGTTTATGGATGAGTGCTCTTGAG 21448 Query 190800 ATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCA 190859 | | ||| | || | ||||| ||||| |||||||| || |||||||| | | | ||| Sbjct 21449 TTAGTCGGTTTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGATAAC-GTGCA 21507 Query 190860 GCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGG---- 190915 || |||||||| | || |||||||| ||||| | |||||| | | | |||||||| Sbjct 21508 GCTGAAGATCCTAAATTTGAGACTTTCTACACCAGAAATATTC-TCTCAATGAAGGTATT 21566 Query 190916 -----TCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCA 190970 | ||||| | ||| |||| || ||||| || ||||| || || |||| || Sbjct 21567 CAGGTTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 21626 Query 190971 GAAGAAGTAT-TGCCAAGAGGCAACGCTCT 190999 | ||||| | | || | || |||||||| Sbjct 21627 G-AGAAGGCTCTACCCTGTGGAAACGCTCT 21655 >seq13902 Length=44788 Score = 86.0 bits (94), Expect = 8e-12 Identities = 237/355 (67%), Gaps = 14/355 (4%) Strand=Plus/Minus Query 190053 CTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACA 190112 || ||||| ||||||| |||| | || || ||| |||| | |||||||||| || Sbjct 6435 CTCTTTCCTTGTGCTTAT-TCGCTGTAGGGGGTTGGTTTACAAGTACGACGTTTGTAACC 6377 Query 190113 AGCTGGTACACCCACGGACTCGCAAGT-----AGTTACC--TTGA--GGGTGCTAATTTT 190163 ||||| || || || | || | | |||| |||| || || |||||| Sbjct 6376 TCATGGTATACTCATGGGTTGGCCACTTGGCCAGTTCATATTTGAAAGGCTG-TAATTTC 6318 Query 190164 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTA-CTTTG 190222 | || || ||||| || || |||||| || | | | || ||| || || | || || Sbjct 6317 TTAACCGCAGCTGTTTCCACTCCTGCTAATAGTTTAGCACACTCTTTTGTTGTTTCTGTG 6258 Query 190223 GGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 190282 | |||||||| | ||||||||||| | ||| ||| | || || | ||| |||| Sbjct 6257 GAGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCCGTGGACTTT 6198 Query 190283 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC 190342 ||| | || || || |||||| ||||| || || ||| | || || || ||||| || Sbjct 6197 TGTTGATCTTCATGGTGCTTTCAGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGC 6138 Query 190343 ACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGC 190396 || ||| || | | || ||||| ||||| || || ||||| || || || || Sbjct 6137 TCGATCTGTTCAAT-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGC 6084 >seq14024 Length=49420 Score = 82.4 bits (90), Expect = 1e-10 Identities = 241/366 (66%), Gaps = 9/366 (2%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | |||||| || || ||||| |||| ||| || Sbjct 34637 TTTGATATTATGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAGGTTAGTCGGGT 34696 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACT-----GGCACGA 190101 || | || ||||| ||||||| | || | || || ||| ||| | || |||| Sbjct 34697 CTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATTTACAGGTACGA 34756 Query 190102 CGTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAAT 190160 |||||| || ||||| || || || | || ||| || | || || ||| ||| Sbjct 34757 CGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGAAGGCTGC-AAT 34815 Query 190161 TTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 190220 || | || || | || || |||||| || | | | || ||| || || | || Sbjct 34816 TTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGTT 34874 Query 190221 -TGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGC 190279 |||||||||||| | ||||||||||| | ||| ||| | || || | ||| | Sbjct 34875 GTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGGCCAGTGGAC 34934 Query 190280 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACT 190339 |||||| || || || || ||||||| ||||| || | ||| | || || || |||| Sbjct 34935 TTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATGTTACGCCAATTCAAACT 34994 Query 190340 GGCACG 190345 || || Sbjct 34995 TGCTCG 35000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633722632512000