Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19]
45,088 sequences; 567,661,845 total letters
Query= NC_031906.1
Length=198190
Score E
Sequences producing significant alignments: (Bits) Value
seq11475 513 2e-140
seq15224 266 4e-66
seq8938 176 6e-39
seq10333 129 7e-25
seq15824 127 3e-24
seq15982 89.7 7e-13
seq13902 86.0 8e-12
seq14024 82.4 1e-10
>seq11475
Length=22225
Score = 513 bits (568), Expect = 2e-140
Identities = 726/1015 (72%), Gaps = 4/1015 (0%)
Strand=Plus/Minus
Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046
||||| || | ||||||||| | |||| || || || ||||| |||||||||||
Sbjct 12883 TTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 12824
Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106
|| | || ||||| ||||||| |||| | || || ||| |||| || |||||||||
Sbjct 12823 CTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTT 12764
Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165
| || ||||| || || || | || ||| || | || || ||| ||||| |
Sbjct 12763 GTAACTTCATGGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTT 12705
Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225
|| || || || || || |||||| || | | | || ||| | | | || |||||
Sbjct 12704 AACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGG 12645
Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285
||||||| | ||||||||||| | ||| ||| | || || || ||| |||||||
Sbjct 12644 TCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGT 12585
Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345
|| || || || ||||||| ||||| || || ||| | || || || ||||| || ||
Sbjct 12584 TGCTCTTCATGGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCG 12525
Query 190346 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404
||| || | | || ||||| ||||| || || ||||| || || || ||||||||||
Sbjct 12524 ATCTGTTCAAT-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTG 12466
Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464
|| || || || || || || || |||||||| |||||||||| ||||| || |
Sbjct 12465 TTTCTGTATTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 12406
Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524
|||| ||||| || || || ||| ||||||| || || || || ||||| ||||||||||
Sbjct 12405 GTGTAGCAGCTATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGA 12346
Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584
|||| || || |||||||| ||||| ||| | |||| | || || || | || || |
Sbjct 12345 ACCCTTTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTC 12286
Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644
|||||| || ||||| |||||||| | || |||||||| ||||| || || |
Sbjct 12285 ATGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGG 12226
Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704
| || || | || |||| ||||| || ||||| |||||||| || |||||||| ||||
Sbjct 12225 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGT 12166
Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764
| ||||| ||||| ||||| || ||||| | ||||| |||||||||||| | ||||
Sbjct 12165 CCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTG 12106
Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824
| || || | ||| | |||| | | | || | | ||||| || | ||||| |
Sbjct 12105 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTAC 12046
Query 190825 GTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTT 190884
|||| |||||||| || |||||||| || | ||||| |||||||| || || |||||||
Sbjct 12045 GTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTT 11986
Query 190885 TTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATC 190944
| ||||| |||||||| || || ||||||||| ||||| | ||| |||| || ||||
Sbjct 11985 TCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 11926
Query 190945 AACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999
| || ||||| || || |||| || || || || | || | || ||||||||
Sbjct 11925 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 11871
>seq15224
Length=172684
Score = 266 bits (294), Expect = 4e-66
Identities = 302/405 (75%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296
||| || || || || |||||||| || | || || || || ||||||| |||||||
Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377
Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGT 189356
||| || ||||| | ||||| || || || ||| || ||||||| |||| ||||
Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437
Query 189357 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGT 189416
||||| || |||||||||||||| |||||||| || |||||| |||| || || |||||
Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497
Query 189417 CTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCG 189476
||||| || || || || || ||||||||||| | || || ||| || || |
Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557
Query 189477 TGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAAC 189536
|||||||| |||| || || || | ||||||| ||||| ||||| ||||||||
Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617
Query 189537 GTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTT 189596
|| || ||||| |||||||||| ||||| ||||| | |||||||||||||| ||
Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677
Query 189597 CAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGT 189641
|||||| |||||||| | ||||||||| | ||||| ||||| ||
Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722
Score = 136 bits (150), Expect = 5e-27
Identities = 139/182 (76%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 189508 GGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTC 189567
||||||| ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793
Query 189568 GGTCGTCTTATCTTC------CAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 189621
||||| | |||||| |||||||| |||||||| || ||||| | ||||||
Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853
Query 189622 TTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATG 189681
||| | ||||| ||||| || || ||||| |||||||| || | || | ||||| |||
Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913
Query 189682 GC 189683
||
Sbjct 89914 GC 89915
>seq8938
Length=12132
Score = 176 bits (194), Expect = 6e-39
Identities = 234/324 (72%), Gaps = 2/324 (1%)
Strand=Plus/Minus
Query 190684 TCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGT 190743
|||| || |||||||| ||||| ||| | ||||| ||||| || ||||| || ||||
Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981
Query 190744 TGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTA 190803
| |||||||||||| | ||||| || || | | | | |||| | | | || |
Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921
Query 190804 TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAG--AGATCAGAGCAGC 190861
| ||||| || | ||||| ||||| |||||||| || ||||||| | || | |||||
Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861
Query 190862 AGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCG 190921
|||||||| || || |||||||| ||||| |||||||| || || ||||||||| ||||
Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801
Query 190922 TTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATT 190981
| | ||| ||| || ||||| || ||||| || || |||| || || || || |
Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 1741
Query 190982 GCCAAGAGGCAACGCTCTGTGATA 191005
|| | || |||||||| | |||
Sbjct 1740 ACCCCGTGGAAACGCTCTTTAATA 1717
>seq10333
Length=16991
Score = 129 bits (142), Expect = 7e-25
Identities = 172/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 190547 TGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATAC 190606
||| ||| | |||| | || || || | || || ||||||| || ||||| |||||
Sbjct 6646 TGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATAC 6705
Query 190607 TTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGA 190666
||| | || |||||||| ||||| || || || || || | || |||| ||
Sbjct 6706 TTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGA 6765
Query 190667 AGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTT 190726
||| || ||||| |||||||| || |||||||| ||||| ||||| ||||| ||||| ||
Sbjct 6766 AGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTT 6825
Query 190727 CAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGA 190785
||||| | ||||| |||||||||||| | ||||| || || | ||| | ||||
Sbjct 6826 TTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGA 6884
>seq15824
Length=139560
Score = 127 bits (140), Expect = 3e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 190359 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTC 190418
|| ||||| ||||| || || ||||| || || || |||||||||||| || || ||
Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242
Query 190419 ATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATC 190478
|| || || || | |||||| |||||||||| ||||| || ||||| ||||| ||
Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182
Query 190479 TTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATG 190538
|| || ||| |||| || || || || || ||||| ||||||| |||| | || || |||
Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122
Query 190539 ATGGG 190543
|||||
Sbjct 61121 ATGGG 61117
>seq15982
Length=164312
Score = 89.7 bits (98), Expect = 7e-13
Identities = 184/270 (68%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 190740 TGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGT 190799
|| || |||||||||||| | ||||| || | | ||| | |||| | | | |
Sbjct 21389 TGATTACATTTCTTTATGTTGTTTGTACCAATAACCGGTTTATGGATGAGTGCTCTTGAG 21448
Query 190800 ATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCA 190859
| | ||| | || | ||||| ||||| |||||||| || |||||||| | | | |||
Sbjct 21449 TTAGTCGGTTTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGATAAC-GTGCA 21507
Query 190860 GCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGG---- 190915
|| |||||||| | || |||||||| ||||| | |||||| | | | ||||||||
Sbjct 21508 GCTGAAGATCCTAAATTTGAGACTTTCTACACCAGAAATATTC-TCTCAATGAAGGTATT 21566
Query 190916 -----TCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATTTCCA 190970
| ||||| | ||| |||| || ||||| || ||||| || || |||| ||
Sbjct 21567 CAGGTTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 21626
Query 190971 GAAGAAGTAT-TGCCAAGAGGCAACGCTCT 190999
| ||||| | | || | || ||||||||
Sbjct 21627 G-AGAAGGCTCTACCCTGTGGAAACGCTCT 21655
>seq13902
Length=44788
Score = 86.0 bits (94), Expect = 8e-12
Identities = 237/355 (67%), Gaps = 14/355 (4%)
Strand=Plus/Minus
Query 190053 CTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACA 190112
|| ||||| ||||||| |||| | || || ||| |||| | |||||||||| ||
Sbjct 6435 CTCTTTCCTTGTGCTTAT-TCGCTGTAGGGGGTTGGTTTACAAGTACGACGTTTGTAACC 6377
Query 190113 AGCTGGTACACCCACGGACTCGCAAGT-----AGTTACC--TTGA--GGGTGCTAATTTT 190163
||||| || || || | || | | |||| |||| || || ||||||
Sbjct 6376 TCATGGTATACTCATGGGTTGGCCACTTGGCCAGTTCATATTTGAAAGGCTG-TAATTTC 6318
Query 190164 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTA-CTTTG 190222
| || || ||||| || || |||||| || | | | || ||| || || | || ||
Sbjct 6317 TTAACCGCAGCTGTTTCCACTCCTGCTAATAGTTTAGCACACTCTTTTGTTGTTTCTGTG 6258
Query 190223 GGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTT 190282
| |||||||| | ||||||||||| | ||| ||| | || || | ||| ||||
Sbjct 6257 GAGTCCTGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCCGTGGACTTT 6198
Query 190283 TGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGC 190342
||| | || || || |||||| ||||| || || ||| | || || || ||||| ||
Sbjct 6197 TGTTGATCTTCATGGTGCTTTCAGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGC 6138
Query 190343 ACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGC 190396
|| ||| || | | || ||||| ||||| || || ||||| || || || ||
Sbjct 6137 TCGATCTGTTCAAT-TGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGC 6084
>seq14024
Length=49420
Score = 82.4 bits (90), Expect = 1e-10
Identities = 241/366 (66%), Gaps = 9/366 (2%)
Strand=Plus/Plus
Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046
||||| || | ||||||||| | |||||| || || ||||| |||| ||| ||
Sbjct 34637 TTTGATATTATGGATGACTGGTTACGTAGAGATCATTTCGTTTTTGTAGGTTAGTCGGGT 34696
Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACT-----GGCACGA 190101
|| | || ||||| ||||||| | || | || || ||| ||| | || ||||
Sbjct 34697 CTATTGCTCTTTCCTTGTGCTTATTTTGCTGTAGGGGGTTGGTTTAATTTACAGGTACGA 34756
Query 190102 CGTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAAT 190160
|||||| || ||||| || || || | || ||| || | || || ||| |||
Sbjct 34757 CGTTTGTAACTTCATGGTATACTCATGGGATGGCCAGTTCATATTTGGAAGGCTGC-AAT 34815
Query 190161 TTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 190220
|| | || || | || || |||||| || | | | || ||| || || | ||
Sbjct 34816 TTCTTAACCGCAATCGATTCTACTCCTGCTAATAGTTTAGCACACTCT-TTGTTGTTGTT 34874
Query 190221 -TGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGC 190279
|||||||||||| | ||||||||||| | ||| ||| | || || | ||| |
Sbjct 34875 GTGGGGTCCTGAAGCACAAGGCGATTTTACTCGTTGGCGTCAATTAGGCGGCCAGTGGAC 34934
Query 190280 TTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACT 190339
|||||| || || || || ||||||| ||||| || | ||| | || || || ||||
Sbjct 34935 TTTTGTTGCTCTTCATGGTGCTTTCGGACTAATAGGTCTTATGTTACGCCAATTCAAACT 34994
Query 190340 GGCACG 190345
|| ||
Sbjct 34995 TGCTCG 35000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633722632512000
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