Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dianthus_20caryophyllus_20[genbank_20GCA_5F000512335.1_202013-12-19] 45,088 sequences; 567,661,845 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq11475 513 2e-140 seq15224 325 4e-84 seq10333 181 1e-40 seq8938 172 6e-38 seq12877 114 1e-20 seq15824 109 6e-19 seq12771 96.9 4e-15 >seq11475 Length=22225 Score = 513 bits (568), Expect = 2e-140 Identities = 720/1008 (71%), Gaps = 2/1008 (0%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 |||| |||||| | |||| || || || ||||| ||||||||||| || | || | Sbjct 12873 TGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 12814 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| ||||| |||||||| || | Sbjct 12813 TTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACAGGTACGACGTTTGTAACTTCAT 12754 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCT 164075 |||| || || || | || | || | || || ||| |||||| | || || || Sbjct 12753 GGTATACTCATGGGTTGGCCAGTTCATATTTGGAAGGCTGC-AATTTCTTAACCGCAGCC 12695 Query 164076 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 164135 || || || |||||| || | | | || ||| | | | || ||||||||||| | Sbjct 12694 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGGGTCCTGAAGCA 12635 Query 164136 CAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCAC 164195 || || || || | | | ||||| ||| | || || || ||| ||||||| || | || Sbjct 12634 CAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCAT 12575 Query 164196 GGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGT 164255 || |||||| || || ||||| ||| | || || || ||| |||| || ||| Sbjct 12574 GGTGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAA 12515 Query 164256 ATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTC 164315 | || || || ||||| || || ||||| || || |||||||| ||||| || ||| Sbjct 12514 TTGCGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTC 12455 Query 164316 CTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCG 164375 || || || || || || |||||| ||||||||||||| || ||||| || || || Sbjct 12454 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCT 12395 Query 164376 ATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCAT 164435 || || ||||| || | || | ||||| || ||||| ||||| || ||||| || ||| Sbjct 12394 ATTTTTCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTGAACCCTTTTCAT 12335 Query 164436 ATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACC 164495 |||||||| ||||| || | | || | ||||| || || |||||||||||||||||| Sbjct 12334 ATGATGGGAGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACC 12275 Query 164496 GTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCT 164555 ||||| |||||||| || || |||||||| ||||||| ||| ||| || | || Sbjct 12274 GTAGAAAATACTTTATTCGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCA 12215 Query 164556 ACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTT 164615 ||||||| ||||| ||||| || |||||||| || ||||| || ||||| || |||||| Sbjct 12214 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGGTCCCAAATTTTT 12155 Query 164616 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATG 164675 || ||||||| |||||| |||||||| || ||||||||| | ||||| || || | Sbjct 12154 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 12095 Query 164676 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGAT 164735 || | |||| ||| || |||| | ||||||| || | || || ||||| ||||| Sbjct 12094 GGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGAC 12035 Query 164736 TTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAG 164795 || || || || || || | ||||| || ||||||||||||||||| ||||| || || Sbjct 12034 TTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAGACTTTCTACACCAAA 11975 Query 164796 AACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAA 164855 || || ||| | |||||||| | ||||| |||||||| | ||| ||||| || ||| Sbjct 11974 AATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 11915 Query 164856 TCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || |||| || ||||| ||||| || | || ||||| || ||| Sbjct 11914 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 11867 >seq15224 Length=172684 Score = 325 bits (360), Expect = 4e-84 Identities = 315/405 (78%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 160958 TGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 161017 ||||||||| || || ||||| || || | ||| || ||| | ||||||| | ||||| Sbjct 89318 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCCGTTTTCTTGATCTATCCAATTGGTCA 89377 Query 161018 AGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGT 161077 ||| || |||||||||||||| | || || |||||||| |||||||||||| |||| Sbjct 89378 AGGAAGCTTTTCTGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 89437 Query 161078 CTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137 |||||||| || ||||||||||| |||||||| || |||||||||||||| |||||||| Sbjct 89438 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGT 89497 Query 161138 CTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCG 161197 ||||| || || || || || ||||||||||| |||| |||||| || || | Sbjct 89498 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATTAG 89557 Query 161198 TGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 161257 |||||||| || || || || || | ||||||| ||||||||||| ||||| || Sbjct 89558 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAAC 89617 Query 161258 CTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 161317 || || ||||| |||||||||| ||| || ||||| ||||||||||||| ||| || Sbjct 89618 TTATAATATCGTAGCTGCTCATGTTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 89677 Query 161318 CAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGT 161362 |||||| |||||||| || ||||||||| | || || ||||| || Sbjct 89678 CAACAATTCCCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGT 89722 Score = 140 bits (154), Expect = 4e-28 Identities = 140/182 (77%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 161229 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTC 161288 ||||||| ||||||||||| ||||| || || || ||||| |||||||||||||| || Sbjct 89734 GGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 89793 Query 161289 GGTCGCCTGATCTTC------CAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTC 161342 ||||| |||||||| ||||| ||| |||||||| || ||||| || |||||| Sbjct 89794 GGTCGATTGATCTTCCAATATCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTC 89853 Query 161343 TTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATG 161402 ||| | || || ||||| || |||||||| ||||| ||||| | ||| | ||| ||| Sbjct 89854 TTCTTAGCTGCTTGGCCGGTAGTCGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATG 89913 Query 161403 GC 161404 || Sbjct 89914 GC 89915 Score = 105 bits (116), Expect = 7e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 160701 ATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCT 160760 || || || || |||||||| ||| | || || || | || |||||||| || || ||| Sbjct 89156 ATTGATGGGATTCGTGAACCTGTTTCGGGATCTCTACTTTACGGAAACAATATTATTTCT 89215 Query 160761 GGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCT 160820 ||||| || ||||| |||| || || || | || || || || || |||||||| Sbjct 89216 GGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCATTTTTATCCAATATGGGAAGCA 89275 Query 160821 GCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTA 160858 |||||| ||||||| ||| | || |||||||||||||| Sbjct 89276 GCATCTGTTGATGAGTGGTTATATAATGGTGGTCCTTA 89313 >seq10333 Length=16991 Score = 181 bits (200), Expect = 1e-40 Identities = 180/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 164466 GCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAA 164525 ||||| || || ||||||||||||||||||||||| |||||||| || || |||||||| Sbjct 6665 GCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAGGATGGTGAT 6724 Query 164526 CAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTC 164585 ||||||| ||| ||| || | || ||||||| ||||| ||||| || |||||| Sbjct 6725 GGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 6784 Query 164586 ACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTG 164645 || || ||||| || ||||| || |||||||| ||||||| |||||| |||||||| Sbjct 6785 ACCGCTAACCGTTTTTGGTCCCAAATTTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 6844 Query 164646 CACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGG 164698 || ||||||||| | ||||| || || | || | |||| ||| || |||| Sbjct 6845 CATTTCTTTATGTTATTTGTACCAGTAACAGGTTTATGGATGAGTGCTCTTGG 6897 >seq8938 Length=12132 Score = 172 bits (190), Expect = 6e-38 Identities = 233/322 (72%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 164584 TCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGT 164643 |||| || ||||| || ||||| || ||||||| ||||||| |||||| |||||| Sbjct 2040 TCACCGCTAACCGTTTTTGGTCCCAACTTTTTGGGGTTGCTTTTTCCAATAAAAGTTGGT 1981 Query 164644 TGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCA 164703 | || ||||||||| | ||||| || || | | | |||| ||| || |||| | Sbjct 1980 TACATTTCTTTATGTTATTTGTACCAGTAACCGTTTTATGGATGAGTGCTCTTGGGGTAG 1921 Query 164704 TCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT-TA-GAGCAGC 164761 ||||||| || | || || ||||| ||||| || || || || || || || | ||||| Sbjct 1920 TCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAAGAAATATACGTGCAGC 1861 Query 164762 AGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCG 164821 || ||||||||||||||||| ||||| || || || || ||| | |||||||| | || Sbjct 1860 CGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCG 1801 Query 164822 TGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCT 164881 ||| ||||||| | ||| ||||| || ||| || |||| || ||||| ||||| Sbjct 1800 TGCTTGGATGGTGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 1741 Query 164882 TCCGAGAGGTAACGCACTCTAA 164903 || | || ||||| || ||| Sbjct 1740 ACCCCGTGGAAACGCTCTTTAA 1719 >seq12877 Length=40778 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 164721 CTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAG 164780 ||| |||| ||||| || || || || || || | ||||| || ||||||||||||||| Sbjct 746 CTTAGTGCCTATGACTTCGTTTCCCAAGAAATACGTGCAGCCGAAGATCCTGAATTTGAG 805 Query 164781 ACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 164840 || ||||| || || || || ||| | |||||||| | ||||| |||||||| | | Sbjct 806 ACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCGTGCTTGGATGGCGGCTCAA 865 Query 164841 GACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTC 164900 || ||||| || ||| || |||| || ||||| ||||| || | || ||||| || Sbjct 866 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTT 925 Query 164901 TAA 164903 ||| Sbjct 926 TAA 928 >seq15824 Length=139560 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 164259 CGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTT 164318 || || || ||||| || || ||||| || || |||||||| ||||| || ||||| Sbjct 61301 CGCCCTTATAATGCAATAGCATTCTCGGGCCCAATTGCTGTTTTTGTTTCTGTATTCCTA 61242 Query 164319 ATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATC 164378 || || || || | |||||| ||||||||||||| || ||||| || || || || Sbjct 61241 ATTTATCCACTAGATCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATT 61182 Query 164379 TTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATG 164438 || ||||| || | || | ||||| || ||||| ||||| | ||| | || |||||| Sbjct 61181 TTTCGATTCATCCTATTTTTTCAAGGGTTTCATAATTGGACGCAGAACTCTTTTCATATG 61122 Query 164439 ATGGG 164443 ||||| Sbjct 61121 ATGGG 61117 >seq12771 Length=31889 Score = 96.9 bits (106), Expect = 4e-15 Identities = 175/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Minus Query 164200 CTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCC 164259 |||||| || || ||||| ||| | || || || ||| |||| || ||| | | Sbjct 8617 CTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTCGATCTGTTCAATTGC 8558 Query 164260 GTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTA 164319 | || || ||||| || || ||||| || | |||| ||| ||||| || ||||| | Sbjct 8557 GCCCTTATAATGCAATAGCATTCTCGGGCCAAATTGTTGTTTTTGTTTCTGTATTCCTAA 8498 Query 164320 TGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGG-----GTCGCGGC 164374 | || || || | |||||| |||||||||||| | ||| |||| || || || | Sbjct 8497 TTTATCCACTAGATCAATCTGGTTGGTTCTTTG-CGCCTAGTTTTGGTGTATGTAGCAAC 8439 Query 164375 GATCTTCAGAT---TCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTT 164431 || || ||| ||||||| || || | ||||| ||||| ||||| | ||||| || Sbjct 8438 TATTTTTCGATCCATCCTCTTTTT--TCGAGGGTTT-CATAATTGGACGTTGAACCCTTT 8382 Query 164432 CCATATGATGGG 164443 ||||||||||| Sbjct 8381 TCATATGATGGG 8370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559012762739200