Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq17465 152 7e-35 seq28652 141 1e-31 seq5765 136 5e-30 seq186726 111 2e-22 seq13556 100 4e-19 seq4229 82.4 1e-13 >seq17465 Length=2784 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 1114 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 1056 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 1055 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 998 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 997 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 947 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 946 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 887 Query 246 GTA 248 ||| Sbjct 886 GTA 884 >seq28652 Length=283007 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 99162 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 99104 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 99103 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 99057 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 99056 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 99003 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 99002 TAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 98943 Query 246 GTA 248 ||| Sbjct 98942 GTA 98940 >seq5765 Length=308280 Score = 136 bits (150), Expect = 5e-30 Identities = 176/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 255157 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 255099 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 255098 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 255052 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 255051 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 254998 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||||||||| |||||| | Sbjct 254997 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGACGGTTTCGG 254938 Query 246 GTA 248 ||| Sbjct 254937 GTA 254935 >seq186726 Length=605 Score = 111 bits (122), Expect = 2e-22 Identities = 159/222 (72%), Gaps = 24/222 (11%) Strand=Plus/Plus Query 23 GGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAAACA 82 |||||||| || ||||||| | ||||| | ||| || ||||||||||||| ||||||| Sbjct 107 GGCGTCAGCCCCTATACATGGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTTGTAAACA 165 Query 83 GTCGCTTCCCT--CTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAGT 140 |||| ||| || || |||||||| || | || || || Sbjct 166 GTCG--TCCGGGCCTGGTCACTGCGACCCCCT-------------TTGTG----AGGAG- 205 Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||||| |||||||||| ||||||| | ||| | Sbjct 206 -GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGGGTTGTCT 264 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | ||| |||||||| |||| ||||||||||||| || Sbjct 265 CGCGCCCCTAGGTATTCTCAACCTACCCACCTGTGTCGGCTT 306 >seq13556 Length=63205 Score = 100 bits (110), Expect = 4e-19 Identities = 168/242 (69%), Gaps = 21/242 (9%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 ||| ||||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 34540 CTTGTCCTTCCGCCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 34482 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 || |||||||||| |||||||||||| || || || |||| || Sbjct 34481 AGATCTGTGTTTTTGGTAAACAGTCGCCCGAGCCTGGTCACTATGACCCCCT-------- 34430 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||| ||||||||| ||||| | |||| |||||||||| Sbjct 34429 -----TTGTG----AGGAGGGGC--CCCTTCTCCTGAAGT-ATGGGGATATTTTGCCGAG 34382 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| ||| |||||||||| Sbjct 34381 TTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCGGT 34322 Query 241 TT 242 || Sbjct 34321 TT 34320 >seq4229 Length=230943 Score = 82.4 bits (90), Expect = 1e-13 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 51719 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC-ACTTAGCAGAGTCC 51661 Query 66 TGTGTTTTTAGTAAACAGTCGCTTC 90 ||| |||||| |||||||||||||| Sbjct 51660 TGTATTTTTAATAAACAGTCGCTTC 51636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691697414296