Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq5765 269 7e-70 seq17465 242 9e-62 seq13556 226 7e-57 seq28652 114 3e-23 seq450 104 6e-20 seq4229 80.6 7e-13 seq186726 77.0 8e-12 seq21265 73.4 1e-10 >seq5765 Length=308280 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 255347 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 255288 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 255287 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 255228 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 255227 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 255168 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 255167 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 255108 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 255107 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 255054 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 255053 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 255011 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 255010 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 254953 >seq17465 Length=2784 Score = 242 bits (268), Expect = 9e-62 Identities = 301/414 (73%), Gaps = 25/414 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 1300 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1241 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1240 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1181 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||| ||| || | ||| | ||||| Sbjct 1180 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGC--------AACTAAC 1129 Query 187 CC--CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 | | | ||||||| |||||||||||| |||| || |||||| || || | Sbjct 1128 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 1069 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304 || ||||||| ||||||||||||||||||||||| | |||||||| | | | | Sbjct 1068 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 1009 Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 | | | | || || |||| ||||||||||||||||||| | Sbjct 1008 TAATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGT 964 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 963 CATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 910 >seq13556 Length=63205 Score = 226 bits (250), Expect = 7e-57 Identities = 300/419 (72%), Gaps = 28/419 (7%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 |||||||||||||| || || ||||||||||| ||| ||||||| ||| |||| Sbjct 34727 CTGCATCTTCACAGACATGTCTATTTCACTGAGCCTCTCTCCGAGACAGTGCCCAGATCG 34668 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 34667 TTACGCCTTTCGTGCGGGTCGGAACTTACCCCACAAGGAATTTCGCTACCTTAGGACCGT 34608 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAAC 186 ||| ||||||||||||||| || ||||||||| || ||| | | | || | || Sbjct 34607 TATAGTTACGGCCGCCGTTCACTGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCAC 34548 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || ||||||| ||| |||||||||||| ||| |||| | ||| || | Sbjct 34547 CAACTTCCTTGTCCTTCCGCCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACT 34488 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 |||| ||| |||||||||| ||||||||||| ||||||| || |||| Sbjct 34487 TTGCGGAGATCTGTGTTTTTGGTAAACAGTCGCCCGAGCCTGGTCACTATGACC------ 34434 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 ||| ||| | || || |||||||| |||| || || | Sbjct 34433 CCCTTTGTGAGGA-----------------GGGGCCCCTTCTCCTGAAG-TATGGGGATA 34392 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCA 425 ||||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||| Sbjct 34391 TTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCA 34333 >seq28652 Length=283007 Score = 114 bits (126), Expect = 3e-23 Identities = 162/232 (70%), Gaps = 23/232 (10%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 99166 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 99107 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 99106 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CCCTTTGT 99053 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||| | ||| | ||||||||||||||||||| || ||||||| Sbjct 99052 GAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCG 99010 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 99009 AGTTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCAC 98958 >seq450 Length=107165 Score = 104 bits (114), Expect = 6e-20 Identities = 83/99 (84%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||| |||||| ||||| ||| | |||||||||||||||||||||||| |||||||| | Sbjct 90530 ATCGCTACGCCTTTCGTACAGATAGGAACTTACCCGACAAGGAATTTCAATACCTTAGAA 90471 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 ||||||| |||||| || | ||| |||| |||||| || Sbjct 90470 CCGTTATAGTTACGACCACTGTT--CCGGTGCTTCGGTC 90434 >seq4229 Length=230943 Score = 80.6 bits (88), Expect = 7e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||||| |||||||||||| |||| || |||||| || || | || ||||||| | Sbjct 51720 ACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCC 51661 Query 258 TGTGTTTTTAATAAACAGTCGC 279 ||| |||||||||||||||||| Sbjct 51660 TGTATTTTTAATAAACAGTCGC 51639 >seq186726 Length=605 Score = 77.0 bits (84), Expect = 8e-12 Identities = 142/211 (67%), Gaps = 23/211 (11%) Strand=Plus/Plus Query 216 GGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAG 275 ||||||| |||||||| | ||| || ||||| ||| |||||||||| ||||||| Sbjct 107 GGCGTCAGCCCCTATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTTGTAAACAG 166 Query 276 TCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCAC 335 ||| |||||||| || ||||| | || ||| | | ||| Sbjct 167 TCGTCCGGGCCTGGTCACTGCGACCCCC------TTTGTGAGGAGG-----------CAC 209 Query 336 CGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTC 395 | ||||||||||||||||||| || ||||||| |||||||| | ||| || Sbjct 210 C------CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGGGTTGTC 263 Query 396 TCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 || || ||| ||||||||| ||| | |||| Sbjct 264 TCGCGCCCCTAGGTATTCTCAACCTACCCAC 294 >seq21265 Length=811174 Score = 73.4 bits (80), Expect = 1e-10 Identities = 74/95 (78%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||| | || || |||||||| | ||||| |||||| |||||||||| | Sbjct 356284 ATCGTTACGCCTTTCATACATGTTGGAACTTATCTGACAAAGAATTTTGCTACCTTAGAA 356225 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTC 161 ||||| ||| ||| || | ||||||| ||| Sbjct 356224 TTGTTATAATTATAACCGTCG-TCACCGGGGATTC 356191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1255734710784