Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5765 178 3e-42 seq3190 178 3e-42 seq10110 176 9e-42 seq27059 125 1e-26 seq17465 107 4e-21 seq14544 107 4e-21 seq28577 102 2e-19 >seq5765 Length=308280 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| || | | |||||| ||||||| |||||||||| ||||||||||| Sbjct 255538 GGGACAGTCTCCGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 255597 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 255598 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 255656 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 255657 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 255716 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 255717 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 255766 >seq3190 Length=161652 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| || | | |||||| ||||||| |||||||||| ||||||||||| Sbjct 155448 GGGACAGTCTCCGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 155507 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 155508 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 155566 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 155567 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 155626 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 155627 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 155676 >seq10110 Length=179448 Score = 176 bits (194), Expect = 9e-42 Identities = 178/229 (78%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| || | | |||||| ||||||| |||||||||| |||||||||||| Sbjct 144248 GGACAGTCTCCGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCG 144189 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTG 230 ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| | Sbjct 144188 TGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGAG 144130 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||| Sbjct 144129 CTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGT 144070 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 144069 GCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 144021 >seq27059 Length=321620 Score = 125 bits (138), Expect = 1e-26 Identities = 142/189 (75%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAG-TAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGC 206 ||||||| || || ||| ||||||| ||||| || |||| | ||| ||| | | Sbjct 80355 GCCTCCCCAAAAGGTAAAGGAGGCGTGCAAAGGTATCCTCGGGCCGGACGGAGATTGGCC 80414 Query 207 GCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | |||||||||||| ||||| | |||||||| | |||| ||| ||||| |||||| Sbjct 80415 CCCAAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCAGCCGTCGAGCAGAGACGAA 80474 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 ||| ||||||| ||||||| || |||||| ||||| |||||||||| | || ||||| Sbjct 80475 AGTTGGGCTTAGTGATCCGACGATGCTGAGTGGAAGGGCCGTCGCTGAATAGACAAAAGT 80534 Query 327 TACCCTGGG 335 ||| || || Sbjct 80535 TACTCTAGG 80543 >seq17465 Length=2784 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 1470 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 1529 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 1530 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 1584 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 1585 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 1644 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 1645 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 1695 >seq14544 Length=165192 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 40779 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 40838 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 40839 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 40893 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 40894 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 40953 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 40954 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 41004 >seq28577 Length=206644 Score = 102 bits (112), Expect = 2e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 251 GTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCG 310 ||| |||||||||||||||||| |||| ||||||| |||||| || ||||| |||||||| Sbjct 51065 GTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCG 51006 Query 311 CTCGACGGATAAAAGCTAC 329 ||| ||||||||||| ||| Sbjct 51005 CTCAACGGATAAAAGTTAC 50987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978453188352