Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq21536 217 3e-54 seq32758 214 4e-53 seq1880 197 3e-48 seq6214 196 1e-47 seq16158 159 7e-37 seq7484 116 8e-24 seq31149 102 2e-19 seq21439 98.7 2e-18 seq28718 87.8 4e-15 seq24698 87.8 4e-15 seq14124 82.4 2e-13 seq31173 78.8 2e-12 seq13170 75.2 2e-11 seq6650 75.2 2e-11 >seq21536 Length=432048 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 15727 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 15669 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 15668 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 15609 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 15608 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 15559 >seq32758 Length=53022 Score = 214 bits (236), Expect = 4e-53 Identities = 150/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 597 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 655 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 656 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 715 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| |||| |||||||||||||| ||| Sbjct 716 ACTGATCATCGCCTTGGTAAGCTATTGCCTCCCCAACTAGCTAATCAGAC 765 >seq1880 Length=405587 Score = 197 bits (218), Expect = 3e-48 Identities = 178/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 220660 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 220717 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| |||| |||||| || |||||||||||| || Sbjct 220718 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCC 220777 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||| ||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 220778 AGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 220837 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 220838 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 220877 Score = 98.7 bits (108), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 9/172 (5%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACC 105 ||||| |||| ||||||| | || ||||| ||||| |||| | || ||| ||||| Sbjct 137241 TCAGGGTTTC-CCCATTGCCGAAGATTCCTCACTG-----TCCCATCGGGAGTAGGGACC 137188 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 ||||||||||||| |||| | ||| |||||||| | | |||| ||| |||||| Sbjct 137187 GTGTCTCAGTTCCCTTGTGGCCATTCACCCTCTCAGGCTAACTACGCATCACAGCCTTG- 137129 Query 166 TGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG 217 || | ||||||||||||||||||| |||| || |||||| ||||| Sbjct 137128 -GAATAAAAACCTCACCAACTAGCTAATACGACTTATCCTCATCAATTAGCG 137078 >seq6214 Length=682563 Score = 196 bits (216), Expect = 1e-47 Identities = 137/155 (88%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 42028 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 41970 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 41969 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 41910 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCA 183 || |||| |||||||||| ||| ||| |||||||| Sbjct 41909 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 41875 >seq16158 Length=488603 Score = 159 bits (176), Expect = 7e-37 Identities = 119/138 (86%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||||| || || ||||||||||| |||||| || ||| |||||||||||||| Sbjct 379675 CACGCGGCACTG-CTCCGTCAGGCTTTCGTCCATTGCGAAAAATTTCCCACTGCTGCCTC 379617 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 379616 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 379557 Query 149 ACGGATCGTCGCCTTGGT 166 || |||| || ||||||| Sbjct 379556 ACTGATCATCTCCTTGGT 379539 >seq7484 Length=138002 Score = 116 bits (128), Expect = 8e-24 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || |||||||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct 78736 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 78795 Query 128 GATCATCCTCTCAGACC 144 |||||||||||| |||| Sbjct 78796 GATCATCCTCTCGGACC 78812 >seq31149 Length=307498 Score = 102 bits (112), Expect = 2e-19 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 |||||| ||| |||||||||||| | |||| |||||| || ||| || |||| | Sbjct 93872 CCTTCTACCAC-CACGCGGCATTGTTCCG-TCAGTCTTTCGTCCGTTGCGAAAAATTCTC 93815 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 || || || |||| ||||| ||||| ||||||||||| |||||||| ||| |||| | Sbjct 93814 CATTGATGTCTCCTATAGGAATCTGGGTCGTGTCTCAGTCCCAGTGTGGCTGCTCATTTT 93755 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||| ||||| ||| ||| ||| |||||| Sbjct 93754 CTCGGACCAACTACTCATCATCGTCTTGGT 93725 >seq21439 Length=57059 Score = 98.7 bits (108), Expect = 2e-18 Identities = 127/172 (74%), Gaps = 9/172 (5%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGG-AGTCTGGACC 105 ||||| |||| ||||||| | || ||||| ||||| |||| | || ||| ||||| Sbjct 10216 TCAGGGTTTC-CCCATTGCCGAAGATTCCTCACTG-----TCCCATCGGGAGTAGGGACC 10269 Query 106 GTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGG 165 ||||||||||||| |||| | ||| |||||||| | | |||| ||| |||||| Sbjct 10270 GTGTCTCAGTTCCCTTGTGGCCATTCACCCTCTCAGGCTAACTACGCATCACAGCCTTG- 10328 Query 166 TGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG 217 || | ||||||||||||||||||| |||| || |||||| ||||| Sbjct 10329 -GAATAAAAACCTCACCAACTAGCTAATACGACTTATCCTCATCAATTAGCG 10379 >seq28718 Length=57052 Score = 87.8 bits (96), Expect = 4e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 39930 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 39989 Query 107 T 107 | Sbjct 39990 T 39990 >seq24698 Length=5285 Score = 87.8 bits (96), Expect = 4e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 2281 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 2222 Query 107 T 107 | Sbjct 2221 T 2221 >seq14124 Length=170824 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 98 TCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGT 157 ||||| |||||||||||| |||||||| |||||||||||||| |||||| ||| ||| | Sbjct 141091 TCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTAC-TATCAT 141149 Query 158 CGCCTTG 164 ||||||| Sbjct 141150 CGCCTTG 141156 >seq31173 Length=124411 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 122810 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 122867 Query 77 CACTG 81 ||||| Sbjct 122868 CACTG 122872 >seq13170 Length=80864 Score = 75.2 bits (82), Expect = 2e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 ||| |||||||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 69287 TCACGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTGG 69342 >seq6650 Length=329048 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||| |||||| |||| |||||| |||| |||||||| | ||| ||| || ||||||| Sbjct 246101 CCATTGCTGCGTCCCATAGGAGCTTGGATAGTGTCTCAATCCCACTGTAGCTAATCATCC 246042 Query 136 TCTCAGACCAGTTACGGATCGTCGCC 161 |||| |||||| ||| ||| ||| || Sbjct 246041 TCTCGGACCAGCTACTGATTGTCACC 246016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067693218560