Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq5765 215 1e-53 seq16812 156 1e-35 seq3301 143 7e-32 seq12612 141 2e-31 seq133997 84.2 5e-14 seq15657 80.6 7e-13 seq238191 73.4 1e-10 >seq5765 Length=308280 Score = 215 bits (238), Expect = 1e-53 Identities = 306/414 (74%), Gaps = 15/414 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 254148 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 254092 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 254091 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 254036 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 254035 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 253978 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 253977 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCTGG 253921 Query 247 GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGT 306 ||||||||||||| || |||||||||| | ||||||||||||||| | ||||| Sbjct 253920 CTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGT 253862 Query 307 TCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCT 366 ||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||| Sbjct 253861 TCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCT 253802 Query 367 TGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 253801 TGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 253748 >seq16812 Length=815016 Score = 156 bits (172), Expect = 1e-35 Identities = 253/349 (72%), Gaps = 15/349 (4%) Strand=Plus/Minus Query 33 TCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATA 92 ||||| ||||| ||||| |||||| ||||| | |||||| ||| || || | |||| Sbjct 568381 TCAACATCAGTCGATTCGGACCTCCACTTAGTT-TCACCCAAGCTT-CATCCAGGTCATA 568324 Query 93 GGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCG 152 | ||||||| || | || |||||| | | || ||| | |||||| |||||||| Sbjct 568323 G-ATAGATCACCAGATT--CGGGTCCACAAGC-AGTGACAATT-GCCCTATGAAGACTCG 568269 Query 153 CTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGAC 210 |||| ||| ||| |||| | ||| |||| | ||||| || |||||||| | Sbjct 568268 CTTT-CGCCACGGCTCCGATGGGTTCCCTTAACCAA-GCCACGACCTATGAGTCGCTGGC 568211 Query 211 CCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATA 270 |||| | ||| ||| | || |||| | | | ||||||||||||| || || Sbjct 568210 TCATTCTTCAACAGGGATGCGGTCAG--AGCCCTGGATCCTCCCACTGCTTGGGAGCTTA 568153 Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | ||| ||||||| |||| |||||||||||| || ||||||||||||| Sbjct 568152 CGGTTTCATGTTCTGTTTCACT-CCCTGATGGGGGTTCTTTTCACCCTTCCCTCACGGTA 568094 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 ||| || | ||||||||| ||| |||||||||||||| | | |||||| Sbjct 568093 CTACTTGA-TATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 568046 >seq3301 Length=40528 Score = 143 bits (158), Expect = 7e-32 Identities = 135/171 (79%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||||| Sbjct 28806 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCT 28864 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||||| Sbjct 28865 TTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGC 28924 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 28925 AAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 28975 >seq12612 Length=976269 Score = 141 bits (156), Expect = 2e-31 Identities = 148/192 (77%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 752189 GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAA--AGCCCTGGC 752132 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 ||||||||||||| || |||||||||| | ||||||||||||||| | |||||| Sbjct 752131 TCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTT 752073 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| || |||||||||||||||| ||| |||||||||| ||| |||||||| |||| Sbjct 752072 CTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTATCCTT 752013 Query 368 GGAGGATGGTCC 379 | | | |||||| Sbjct 752012 GCAAGGTGGTCC 752001 >seq133997 Length=759 Score = 84.2 bits (92), Expect = 5e-14 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 || ||||||||| || |||||||| |||| || |||||||||| ||| ||| ||||||| Sbjct 627 GGAGTTCTTTTCACCCTTCCCTCATGGTATTATTTCACTATCGATCACCCAGGAGTATTT 686 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | |||| || | || | |||| || | ||||||| Sbjct 687 AGCCTTGCAAGGTGGTCCTTGCTGATTCGCACGAGATTCCACGTGTCCCATGCTACTCG 745 >seq15657 Length=76188 Score = 80.6 bits (88), Expect = 7e-13 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 || ||| ||||| || |||||||| |||| || |||||||||| ||| ||| ||||||| Sbjct 40384 GGAGTTGTTTTCACCCTTCCCTCATGGTATTATTTCACTATCGATCACCCAGGAGTATTT 40325 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | |||| || | || | |||| || | ||||||| Sbjct 40324 AGCCTTGCAAGGTGGTCCTTGCTGATTCGCACGAGATTCCACGTGTCCCATGCTACTCG 40266 >seq238191 Length=474 Score = 73.4 bits (80), Expect = 1e-10 Identities = 75/97 (77%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 ||||| | |||||| |||| | | || | | |||||| ||||||||| ||||||| Sbjct 269 TTTCAAGCACTATTTGACTCTCTTTTCAAAG-TCCTTTTCATCTTTCCCTCGCGGTACTT 327 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 |||| ||||||||| ||| ||||||||||||||| Sbjct 328 GTTCGCTATCGGTCTCTCACCCGTATTTAGCCTTGGA 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1236611847168