Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq32758 154 2e-35 seq21536 154 2e-35 seq1880 141 2e-31 seq20009 140 5e-31 seq4222 134 2e-29 seq16158 105 1e-20 seq8972 96.9 6e-18 seq9341 93.3 7e-17 seq4209 86.0 1e-14 >seq32758 Length=53022 Score = 154 bits (170), Expect = 2e-35 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 255 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 314 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||| |||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 315 CCGATCTCTACACATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 374 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||| | ||||||||||| | ||| || | ||||| Sbjct 375 CTTGGTAGTTTCCACCGCATGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 434 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 435 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 494 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||| ||||||| ||||||||| ||||||||| ||| || Sbjct 495 CCGCGGCTACTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 539 >seq21536 Length=432048 Score = 154 bits (170), Expect = 2e-35 Identities = 205/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 16068 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 16009 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||| |||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 16008 CCGATCTCTACACATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 15949 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 15948 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 15889 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 15888 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 15829 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 15828 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 15784 >seq1880 Length=405587 Score = 141 bits (156), Expect = 2e-31 Identities = 209/295 (71%), Gaps = 22/295 (7%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 220343 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 220402 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 220403 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 220462 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTT---CACATCTG 177 ||||| || ||||| | ||| || ||| |||||| || | | Sbjct 220463 TCAAGTGAATTGGTTTCGAGAGCA---------TTCCGCC---AGTTTTTGGCAACTTTA 220510 Query 178 ACTTGCC------TTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTT 230 |||| | ||| |||||||| ||||||||| |||| | | |||| | ||| ||| Sbjct 220511 ACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTT 220570 Query 231 GCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| || ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 220571 GCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 220625 >seq20009 Length=347207 Score = 140 bits (154), Expect = 5e-31 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||| | | | |||||| || |||||| |||||||| | Sbjct 51635 GCTTTCGTCTCTCAGTGTCATTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 51694 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||| |||||||||| | ||| | |||||| |||| || | | |||| || Sbjct 51695 CCGATCTCTACACATTTCACCGGTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 51754 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 51755 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 51814 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 51815 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 51874 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||| |||||||||| ||||||||| ||||||||| ||| || Sbjct 51875 CCGCGACTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 51919 >seq4222 Length=193645 Score = 134 bits (148), Expect = 2e-29 Identities = 178/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || |||||| |||||||| | | || ||||| |||||||||||| ||| | |||||| Sbjct 182459 GCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACACATTTCACCGCTCCACCGGAAATTCC 182518 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 |||| || | | |||| || |||||| | ||| | ||||||||||| Sbjct 182519 CTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCATGTCCAGGGTTGAGCCCTG 182578 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| || | ||||| || ||||| | |||||| |||||| | ||||||| Sbjct 182579 GGATTTGACGGCGGACTTAAAAAGCCAACTACAGCCGCTTTACGCCCAATCATTCCGGAT 182638 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||| ||| || ||||||||||| ||||||| ||||||||| ||||||||| Sbjct 182639 AACGCTTGCATCCTCTGTCTTACCGCGGCTACTGGCACAGAGTTAGCCGATGCTTATTCC 182698 Query 284 TCAGGTA 290 ||| || Sbjct 182699 CCAGATA 182705 >seq16158 Length=488603 Score = 105 bits (116), Expect = 1e-20 Identities = 175/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 42 CCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAA-T 100 |||| ||| || |||||||| | | || ||||| |||||||||||| ||| ||||| | Sbjct 379976 CCGCTTTCTCCGTTGGTGTTCTTTCCGATCTCTACACATTTCACCGCTCCAC-CGGAAGT 379918 Query 101 TCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCC 160 ||| |||| || | | |||| || |||||| | || | |||||||||| Sbjct 379917 TCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCC 379858 Query 161 CATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCG 220 | | ||| || | |||| || |||||| | || ||| |||||| | |||| Sbjct 379857 CTAGGATTTGACGACGTACTTAGAAAGCCACCTACAGACGCTATACGCCCAATCATTCCG 379798 Query 221 GATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTAT 280 |||||||||||| ||| || ||||||| |||||| | ||||||||| |||||| Sbjct 379797 GATAACGCTTGCATCCTCAGTCTTACCGCAGCTGCT----CAGAGTTAGCCGATGCTTAT 379742 Query 281 TCCTCAGGTA 290 ||| ||| || Sbjct 379741 TCCCCAGATA 379732 >seq8972 Length=784345 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||| | ||| || ||| | Sbjct 326871 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTACATCCTCTGTCTTATC 326812 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||||| ||||||||| ||| || Sbjct 326811 GCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 326769 >seq9341 Length=129751 Score = 93.3 bits (102), Expect = 7e-17 Identities = 77/92 (84%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGC--CACCTACGTATTACCGCGGCTGCTGG 258 ||||||||||||| | |||||||||||||||| || ||| | |||||||||||||||| Sbjct 121533 CTTTACACCCAATCATTCCGGATAACGCTTGCATCATCTA--TCTTACCGCGGCTGCTGG 121476 Query 259 CACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||| | ||||||| ||| || Sbjct 121475 CACAGAGTTAGCCGATGTTTATTCCCCAGATA 121444 >seq4209 Length=462070 Score = 86.0 bits (94), Expect = 1e-14 Identities = 192/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 8 TTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCG 67 ||||| ||||| | |||| | | |||||| | |||| | |||||||| | | Sbjct 287819 TTTCGTCTCTCAGTGCCAGTGTCAGCCCAGCAGATTTCATTCGGCGTTGGTGTTCTTTCC 287760 Query 68 TATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAA 127 || |||| ||||||| |||| || | |||||| |||| || | |||| || Sbjct 287759 GATCTCTATACATTTCATCGCTCCATCGGAAATTCCCTCTGCCCCTATCGTACTCTAGCT 287700 Query 128 AAACAGTTTCAAATGCAGGCTATG---GGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 |||||| | | | |||| |||||||||| | ||| | | ||||| Sbjct 287699 TGGTAGTTTCCA---CCGTCTATCCATGGTTGAGCCCTAGGATTTGATGGCAGACTTAAA 287643 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||| |||||| | ||||||||||||||||| || || || Sbjct 287642 AAGCCACCTACAGAAGCCTTACGCCCAATCATTCCGGATAACGCTTGCCCTCT--GTCTT 287585 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||||| ||||| ||| ||||||||| ||| || Sbjct 287584 ACCATGGCTGCTGGCACAGAGTTATCCGATGCTTATTCCCCAGATA 287539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825574333192