Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq32758 248 2e-63 seq21536 248 2e-63 seq6214 199 1e-48 seq16158 172 1e-40 seq1880 161 2e-37 seq7484 116 9e-24 seq31149 113 1e-22 seq28718 95.1 3e-17 seq25110 95.1 3e-17 seq24698 95.1 3e-17 seq14124 78.8 2e-12 seq13170 77.0 8e-12 >seq32758 Length=53022 Score = 248 bits (274), Expect = 2e-63 Identities = 302/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 571 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 630 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 631 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 690 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 691 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCCCCA 750 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| || | || ||| ||| |||| Sbjct 751 ACTAGCTAATCAGACGAAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 799 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 800 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 857 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 ||||| | | || | | |||| |||||||| ||| || || |||| Sbjct 858 GTTTCTTACGCGTTCCCCCCCCGCCCGCCACT------GGAAACACCA-----CTTC--- 903 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 904 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 950 >seq21536 Length=432048 Score = 248 bits (274), Expect = 2e-63 Identities = 302/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 15753 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 15694 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 15693 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 15634 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 15633 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 15574 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| || | || ||| ||| |||| Sbjct 15573 ACTAGCTAATCAGACGCAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 15525 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 15524 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 15467 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||| |||| ||||||| ||| || || |||| Sbjct 15466 GGTTCTTACGCGTTACTCCCCCGGACGCCACT------GGAAACACCA-----CTTC--- 15421 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 15420 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 15374 >seq6214 Length=682563 Score = 199 bits (220), Expect = 1e-48 Identities = 152/180 (84%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 42054 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 41995 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 41994 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 41935 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 41934 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 41875 >seq16158 Length=488603 Score = 172 bits (190), Expect = 1e-40 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || || || |||||||| | | ||||||||| ||| | |||||||| || ||||| Sbjct 379701 TTCACGACTCGTGGGCCTTCTACCTCCACGCGGCACTGCTCCGTCAGGCTTTCGTCCATT 379642 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||| |||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 379641 GCGAAAAATTTCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 379582 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||| |||||||||| ||||||||| |||| || ||| ||| Sbjct 379581 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCTCCTTGGT 379539 >seq1880 Length=405587 Score = 161 bits (178), Expect = 2e-37 Identities = 152/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 220660 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 220719 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| |||| |||||| || |||||||||||| |||| Sbjct 220720 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGCGGGAGTCCGGGCCGTGTCTCAGTCCCAG 220779 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 220780 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 220839 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 220840 CCAACTACCTAAT 220852 >seq7484 Length=138002 Score = 116 bits (128), Expect = 9e-24 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 78736 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCT 78795 Query 129 GGTCATCCTCTCAGACC 145 | |||||||||| |||| Sbjct 78796 GATCATCCTCTCGGACC 78812 >seq31149 Length=307498 Score = 113 bits (124), Expect = 1e-22 Identities = 127/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 5 TTTACA--ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||| |||| |||||||| | |||||||||| | | | |||| ||| || || Sbjct 93889 TTTACACGACCCATGGGCCTTCTACCACCACGCGGCATTGTTCCGTCAGTCTTTCGTCCG 93830 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 ||| | || |||| ||| || || |||| ||||| ||||| ||||||||||| ||||| Sbjct 93829 TTGCGAAAAATTCTCCATTGATGTCTCCTATAGGAATCTGGGTCGTGTCTCAGTCCCAGT 93770 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGC 171 ||||||| |||| |||| ||||| ||| ||| ||| || ||| ||| Sbjct 93769 GTGGCTGCTCATTTTCTCGGACCAACTACTCATCATCGTCTTGGTTGGC 93721 >seq28718 Length=57052 Score = 95.1 bits (104), Expect = 3e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 37 GCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGG 96 |||| ||| | |||||||| ||||||||| | || ||||||||||||||||||||||||| Sbjct 39919 GCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGG 39978 Query 97 AGTCTGGACCGT 108 ||||||| |||| Sbjct 39979 AGTCTGGGCCGT 39990 >seq25110 Length=200955 Score = 95.1 bits (104), Expect = 3e-17 Identities = 113/154 (73%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| |||||||||| ||| | ||||||| ||||| ||| | | |||| Sbjct 163271 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 163330 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||||||||||| ||| || || |||| |||| |||||||| Sbjct 163331 TCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 163373 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| || ||||||||||||||| ||||| Sbjct 163374 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 163407 >seq24698 Length=5285 Score = 95.1 bits (104), Expect = 3e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 37 GCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGG 96 |||| ||| | |||||||| ||||||||| | || ||||||||||||||||||||||||| Sbjct 2292 GCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGG 2233 Query 97 AGTCTGGACCGT 108 ||||||| |||| Sbjct 2232 AGTCTGGGCCGT 2221 >seq14124 Length=170824 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 ||||| |||||||||||| |||||||||||| |||||||||| ||||||||| ||| | Sbjct 141091 TCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA-CTATCAT 141149 Query 159 CGCCT 163 ||||| Sbjct 141150 CGCCT 141154 >seq13170 Length=80864 Score = 77.0 bits (84), Expect = 8e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 || ||| | ||| |||| ||||||||| | || ||||||||||||||||||| ||||||| Sbjct 69278 ATTGCTCCGTCACGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCTGTAGGAG 69337 Query 99 TCTGG 103 ||||| Sbjct 69338 TCTGG 69342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1217488983552