Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq32758 250 6e-64 seq1880 221 3e-55 seq20009 206 6e-51 seq21536 187 6e-45 seq4209 165 2e-38 seq4222 159 8e-37 seq16158 131 4e-28 seq8972 109 1e-21 seq6004 105 2e-20 seq21465 98.7 2e-18 seq5317 95.1 3e-17 seq9341 82.4 2e-13 >seq32758 Length=53022 Score = 250 bits (276), Expect = 6e-64 Identities = 260/341 (76%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||| ||||||||||| || ||| || ||| Sbjct 535 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGTAGCCGCGGTAAGACAGAGGATGCAAGC 476 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 475 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 416 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || ||| | |||||| | ||| |||| | | ||||||| Sbjct 415 TCCCAGGGCTCAACCCTGGACATGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 356 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||| ||||| || | | |||||||| |||||| Sbjct 355 GAGGGAATTTCCGGTGGAGCGGTGAAATGTGTAGAGATCGGAAAGAACACCAACGGCGAA 296 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 295 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 236 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||||||| ||||||| ||||||||||||| |||||||| Sbjct 235 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 195 >seq1880 Length=405587 Score = 221 bits (244), Expect = 3e-55 Identities = 255/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 220629 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 220570 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | || Sbjct 220569 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTT 220510 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| || | || | | ||| |||| | ||||| | || || ||||| Sbjct 220509 AAAGT---TGCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 220456 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 220455 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 220396 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 220395 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 220336 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 220335 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 220296 >seq20009 Length=347207 Score = 206 bits (228), Expect = 6e-51 Identities = 236/317 (74%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||| |||||||| || ||| || ||| Sbjct 51915 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGTCGCGGTAAGACAGAGGATGCAAGC 51856 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 51855 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 51796 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 51795 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 51736 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| | |||||||||| ||||| || | | |||||||| |||||| Sbjct 51735 GAGGGAATTTCCGGTGGACCGGTGAAATGTGTAGAGATCGGAAAGAACACCAACGGCGAA 51676 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | | |||||||||| ||||||| ||||||| || ||||| Sbjct 51675 AGCACTCTGCTGGGCCGACAATGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 51616 Query 305 AGATACCCTGGTAGTCC 321 |||||||| ||||||| Sbjct 51615 AGATACCCCAGTAGTCC 51599 >seq21536 Length=432048 Score = 187 bits (206), Expect = 6e-45 Identities = 210/281 (75%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 15788 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 15847 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 15848 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 15907 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 15908 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 15967 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||| ||||| || | | |||||||| |||||| Sbjct 15968 GAGGGAATTTCCGGTGGAGCGGTGAAATGTGTAGAGATCGGAAAGAACACCAACGGCGAA 16027 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 || |||||| | | |||||||||||| ||||||| Sbjct 16028 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGC 16068 >seq4209 Length=462070 Score = 165 bits (182), Expect = 2e-38 Identities = 245/344 (71%), Gaps = 9/344 (3%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||| ||||| |||||||||||| ||||| || || |||| ||| Sbjct 287543 TGGGGAATAAGCATCGGATAACTCTGTGCCAGCAGCCATGGTAAGAC--AGAGGGCAAGC 287600 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||| | | |||||||| || ||||||| | | ||| Sbjct 287601 GTTATCCGGAATGATTGGGCGTAAGGCTTCTGTAGGTGGCTTTTTAAGTCTGCCATCAAA 287660 Query 125 GGCTATGGCTCAACCCCGG---GACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGG 181 ||| ||||||||| || ||| | | |||||| | |||||||| | |||| Sbjct 287661 TCCTAGGGCTCAACCATGGATAGACGG---TGGAAACTACCAAGCTAGAGTACGATAGGG 287717 Query 182 GCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGC 241 ||| |||||| | || |||| ||||||| |||| || | | |||||||| | | Sbjct 287718 GCAGAGGGAATTTCCGATGGAGCGATGAAATGTATAGAGATCGGAAAGAACACCAACGCC 287777 Query 242 GAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGG 301 ||| | |||||| ||| |||| ||||||| ||||| | |||||| || | Sbjct 287778 GAATGAAATCTGCTGGGCTGACACTGGCACTGAGAGACGAAATCTAGGGGAGTGAATGAG 287837 Query 302 ATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 | |||| ||| ||||||| |||||||| |||| |||||||| Sbjct 287838 A-AAGATGCCCAAGTAGTCCTAGCCGTAAATGATGGATACTAGG 287880 >seq4222 Length=193645 Score = 159 bits (176), Expect = 8e-37 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||| ||||||||||| || ||| || ||| Sbjct 182701 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGTAGCCGCGGTAAGACAGAGGATGCAAGC 182642 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| | |||| ||| || ||||||| | || ||| Sbjct 182641 GTTATCCGGAATGATTGGGCGTAAAGCGGCTGTAGTTGGCTTTTTAAGTCCGCCGTCAAA 182582 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || ||| | |||||| | ||| |||| | | ||||||| Sbjct 182581 TCCCAGGGCTCAACCCTGGACATGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 182522 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||| ||||| || | | |||||||| |||||| Sbjct 182521 GAGGGAATTTCCGGTGGAGCGGTGAAATGTGTAGAGATCGGAAAGAACACCAACGGCGAA 182462 Query 245 GGC 247 || Sbjct 182461 AGC 182459 >seq16158 Length=488603 Score = 131 bits (144), Expect = 4e-28 Identities = 176/245 (72%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| | |||||| ||||||| || ||| || ||| Sbjct 379736 TGGGGAATAAGCATCGGCTAACTCTG----AGCAGCTGCGGTAAGACTGAGGATGCAAGC 379791 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | |||||||| || || |||||||| || ||||| | || ||| Sbjct 379792 GTTATCCGGAATGATTGGGCGTATAGCGTCTGTAGGTGGCTTTCTAAGTACGTCGTCAAA 379851 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 ||| |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 379852 TCCTAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 379911 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||| | | ||| |||||||||||| ||||| || | | |||||||| || ||| Sbjct 379912 GAGGGAACTTCCGGTGGAGCGGTGAAATGTGTAGAGATCGGAAAGAACACCAACGGAGAA 379971 Query 245 GGCGG 249 |||| Sbjct 379972 AGCGG 379976 >seq8972 Length=784345 Score = 109 bits (120), Expect = 1e-21 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||| ||| || ||| | ||| Sbjct 326773 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGATAAGACAGAGGATGTAAGC 326832 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || |||| || | || ||| Sbjct 326833 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAATCCGCCGTCAAA 326892 Query 125 GGCTATGGCTCAACCCCGGGACTGCT-TTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 | | ||||||| ||| |||| | | | |||||| | |||||||| | | ||| Sbjct 326893 TCCCAGGGCTCAA-CCCTGGACAGGTAGTGGAAACTACCAAGCTAGAGTACGGTAGG 326948 >seq6004 Length=296994 Score = 105 bits (116), Expect = 2e-20 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| | |||||||| || ||||||| | || ||| Sbjct 98332 GTTATCCGGAATGATTGGGCGTAAAGCTTCTGTAGGTGGCTTTTTAAGTCCGTCGTCAAA 98273 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | |||||||||| || || | |||||| | ||| |||| | |||| || Sbjct 98272 TCTCAGGGCTCAACCCTGGACAAGCGGTGGAAACTACCAAGCTGGAGTACGTTAGGGTCA 98213 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | || ||||||||||| ||||| || | | |||||||| |||||| Sbjct 98212 GAGGGAATTTCCGATGGAGCGGTGAAATTTGTAGAGATCGGAAAGAACACCAACGGCGAA 98153 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAG 275 || |||||| | | |||||||||||| Sbjct 98152 AGCACTCTGCTGGGCCGACACTGACACTGAG 98122 >seq21465 Length=42109 Score = 98.7 bits (108), Expect = 2e-18 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 || ||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 32610 ACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAT 32551 Query 324 GCCGTAAACGATGA 337 |||||||||||||| Sbjct 32550 GCCGTAAACGATGA 32537 >seq5317 Length=422813 Score = 95.1 bits (104), Expect = 3e-17 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 |||||||||| || || |||||| | ||| |||| | | ||||||| | | Sbjct 385814 GGCTCAACCCTGGACAAGCGGAGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGAA 385873 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||| | ||| | || ||||||| ||||| || | || ||||| | |||| | | Sbjct 385874 ATTTCCGGTGGAACGATGAAATGTGTAGAGATCGAAAAGAGCACCAACGACGAAAACAGT 385933 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 | ||| | | ||||||||||| ||||||| ||||||| || | ||||||||| Sbjct 385934 CTTTTGGGCCGACACTGACACTGAAAGACGAAAGCTAGGGGAGCGAATAAGATTAGATAT 385993 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG 347 ||| |||||| || |||||||||| ||||||| || Sbjct 385994 CCTAATAGTCCTAGCAGTAAACGATGGATACTAGATG 386030 >seq9341 Length=129751 Score = 82.4 bits (90), Expect = 2e-13 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| ||||||||||||||||||| | | | || ||||||||||||||| | Sbjct 121462 CGGCTAACTCTGTGCCAGCAGCCGCGGTAAGATAGATGATGCAAGCGTTATCCGGAATGA 121521 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| |||||| || | ||||| || ||| ||| | | || | |||||||||| Sbjct 121522 TTGGGTGTAAAGCGTCTGCGGGTGGCTTTTTAGGTCCGCCAT-CAATCCCATGGCTCAAC 121580 Query 139 CCCGG 143 || || Sbjct 121581 CCTGG 121585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198366119936