Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq5765 132 2e-28 seq4222 113 2e-22 seq2084 102 3e-19 seq18752 93.3 1e-16 >seq5765 Length=308280 Score = 132 bits (146), Expect = 2e-28 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 254013 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 254072 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 254073 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 254132 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 254133 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 254192 Query 182 CCGAAA 187 |||||| Sbjct 254193 CCGAAA 254198 >seq4222 Length=193645 Score = 113 bits (124), Expect = 2e-22 Identities = 181/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 179106 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 179047 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| |||||| ||| ||| | | || || || | ||| ||||||| |||| Sbjct 179046 AGGCCCCTAAATGATCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 178989 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| || Sbjct 178988 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 178930 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT-CATTTATATG 544 ||| || || | |||| |||| ||| ||||||| ||||||| | ||| Sbjct 178929 TTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATA-C 178872 Query 545 ATCGGTAGGGGAGC 558 |||||||||||||| Sbjct 178871 ATCGGTAGGGGAGC 178858 >seq2084 Length=474923 Score = 102 bits (112), Expect = 3e-19 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| |||||||||| | ||| | || || || Sbjct 150751 GACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAACTTGGGTGAAACTAAGTGAAG 150810 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||| ||||| ||||| |||||||||| || ||| ||||||||| |||||||||| | | Sbjct 150811 GTCAGAACCAACTAACGTTGAAAAATCAGCGGAGGAGCTGTGGTTAGGGGTGAATACC-A 150869 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | ||| || ||||||||||| |||||| Sbjct 150870 CTCGAACCCAGAGCCAGCTGGTTCTCCCCGAAA 150902 >seq18752 Length=383739 Score = 93.3 bits (102), Expect = 1e-16 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 49 TGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108 ||||||| ||||| ||||||||||| | ||| | || || ||||| ||||| ||| Sbjct 135530 TGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGAAGGTCAGAACCGACTG 135471 Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 |||||||| ||| || ||||||| ||||| ||||||||||| Sbjct 135470 ATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 135430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1682811998208