Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5765 185 3e-44 seq17465 183 1e-43 seq13556 134 5e-29 seq450 91.5 5e-16 seq3190 87.8 6e-15 seq10110 84.2 7e-14 >seq5765 Length=308280 Score = 185 bits (204), Expect = 3e-44 Identities = 392/572 (69%), Gaps = 25/572 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 255682 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 255623 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 255622 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 255564 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 255563 AGAAACTGTCTACCGGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 255504 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 255503 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 255447 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || ||||| ||| | | |||| Sbjct 255446 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAACCCAATCCCAGGGAACAGTG 255389 Query 293 A--AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | || | | |||||||| |||| | || | | ||||||| || | | Sbjct 255388 AGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 255329 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| |||| | ||||||| | || |||||||||| ||||||| |||| Sbjct 255328 TATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 255270 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 255269 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 255210 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| | ||| ||| || || | | |||| | ||| ||| Sbjct 255209 ACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACC 255156 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| |||| ||||||||||||| || |||| Sbjct 255155 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 255124 >seq17465 Length=2784 Score = 183 bits (202), Expect = 1e-43 Identities = 292/415 (70%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 1540 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 1482 Query 136 GGCACTGTCCC----CAACCCAGATCATGGG--CCAAGGTTAGATATCCACTACGGTCAG 189 ||| |||||| | ||| || || || | |||||| |||| | || Sbjct 1481 CGCAGTGTCCCGCCTCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 1422 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||||| Sbjct 1421 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 1377 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 |||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 1376 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 1317 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 1316 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 1257 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 1256 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 1197 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||||||| |||| |||||| ||||||||||| |||| ||| ||| Sbjct 1196 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATT 1142 >seq13556 Length=63205 Score = 134 bits (148), Expect = 5e-29 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 34670 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCCACAAGGAATTTCGCTACCTTAGGAC 34611 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||||||| ||||||||||| Sbjct 34610 CGTTATAGTTACGGCCGCCGTTCACTGGGGCTTC 34577 >seq450 Length=107165 Score = 91.5 bits (100), Expect = 5e-16 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||| |||||| ||||| ||| | |||||||||||||||||||||||| |||||||| | Sbjct 90529 TCGCTACGCCTTTCGTACAGATAGGAACTTACCCGACAAGGAATTTCAATACCTTAGAAC 90470 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| ||| | ||| | || ||||| Sbjct 90469 CGTTATAGTTACGACCACTGTT--CCGGTGCTTC 90438 >seq3190 Length=161652 Score = 87.8 bits (96), Expect = 6e-15 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 155592 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 155533 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 155532 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 155474 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 155473 AGAAACTGTCTACCGGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 155414 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | ||||||||||| ||| Sbjct 155413 TAGCTCTTCCAGAGTGGTATCTCA 155390 >seq10110 Length=179448 Score = 84.2 bits (92), Expect = 7e-14 Identities = 142/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 144105 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 144164 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 144165 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 144223 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | ||||||| || || || || |||||||||| || Sbjct 144224 AGAAACTGTCTACCGGAGACTGTCCGTTGGCCCTTAGGTCCTGACACAAGGTTAGAATTC 144283 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | ||||||||||| ||| Sbjct 144284 TAGCTCTTCCAGAGTGGTATCTCA 144307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1695560573952