Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dorcoceras_20hygrometricum_20[genbank_20GCA_5F001598015.1_202016-04- 28] 401,752 sequences; 1,521,360,707 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq24293 634 6e-177 seq1880 385 5e-102 seq27014 224 1e-53 seq32758 196 5e-45 seq5280 154 2e-32 seq28127 118 1e-21 seq28567 104 3e-17 seq21905 91.5 2e-13 seq16835 91.5 2e-13 >seq24293 Length=256785 Score = 634 bits (702), Expect = 6e-177 Identities = 735/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| | ||| |||| ||| | || || || || | || ||||| || || || Sbjct 206416 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 206357 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| |||| || || | |||||||| |||||||| Sbjct 206356 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATTGCCTTCATTGCTGCTCC 206298 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 206297 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 206238 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || ||||| ||||| || |||| |||| || |||||| | ||||| || || || Sbjct 206237 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCACTTTTACCCAAT 206178 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| ||||| | || || ||| | || ||||| ||||||| || | |||| Sbjct 206177 CTGGGAAGCAGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAATTAATAGT 206118 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | || | | || |||||||||||||||||||| || ||| Sbjct 206117 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 206058 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| |||||||| || ||||| ||||||||| || ||||| || || |||||| | || Sbjct 206057 TCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCCGCTGCTACCGC 205998 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 || ||| | | ||||| | ||||| || ||| || |||| ||||||||| || || Sbjct 205997 AGTTTTCTTGATTTACCCAATAGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 205938 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||||||||||| || | |||| |||||||||| || || ||||| ||||||||||| || Sbjct 205937 TTCTGGTACTTTCAATTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 205878 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 || |||||| | ||||| ||||| |||||||| || || || ||| |||||||||||| Sbjct 205877 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 205818 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || |||| ||||||||| | |||| || || ||||||| ||| || || | || Sbjct 205817 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 205758 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 ||||| ||||||||||||||||| ||||| || ||||| || || ||||| || || || Sbjct 205757 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 205698 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 || ||||||||||||||||| || |||||||| || || | ||||| ||||| || Sbjct 205697 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCATTACACTTTTTCCTAGC 205638 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 |||||||||||| || || |||||||| ||||| | ||| || || ||||| ||||| Sbjct 205637 TGCTTGGCCTGTAGTGGGTATCTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 205578 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 || ||||||||||| |||||||| || | | || | |||||| | || | || || Sbjct 205577 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGCGTGTAATTAATAC 205518 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 |||||| || | ||||||| ||| || || |||||||| ||||| || ||||| || Sbjct 205517 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 205458 Query 160762 TCACAACTTCCCTCTCGACCTTGCTGCT 160789 ||| ||||||||||| || || |||||| Sbjct 205457 TCATAACTTCCCTCTAGATCTAGCTGCT 205430 >seq1880 Length=405587 Score = 385 bits (426), Expect = 5e-102 Identities = 460/623 (74%), Gaps = 1/623 (0%) Strand=Plus/Minus Query 161913 TGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTG 161972 |||||| |||||||||||||| || || || || ||||| || || ||||| || Sbjct 130705 TGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGGCAGTCTGGTTG 130646 Query 161973 GTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGG 162032 |||||| || || ||| | || || ||||| || | ||| |||| || | ||||| Sbjct 130645 GTTCTTTGCACCTAGTTTTAGTGTAGCAGCTATATTTCGATTCATACTCTTTTTTCAAGG 130586 Query 162033 TTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGG 162092 || || |||||||| || || || || || |||||||| || || ||| | ||||| | Sbjct 130585 ATTTCATAATTGGACACTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGC 130526 Query 162093 TGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGA 162152 ||||||| | | |||||||| |||| || || ||||| || | | |||||||||| Sbjct 130525 TGCTTTGTTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGA 130466 Query 162153 ACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGT 162212 |||||||| ||| |||||| || | || |||| || || ||||| || ||||| Sbjct 130465 TGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGT 130406 Query 162213 TACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTT 162272 || || ||||| || ||||| || ||||| || |||||||| ||||| |||||||| Sbjct 130405 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTT 130346 Query 162273 GCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTAT 162332 |||||||||||| | || || || || | ||| | |||| ||| || | || | | Sbjct 130345 ACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGT 130286 Query 162333 TGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGA 162392 || | ||||| || || ||||| || ||||| || |||||||| ||||| |||||||| Sbjct 130285 CGGTTTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGCGCAGCGGA 130226 Query 162393 GGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGC 162452 |||||||||||||| || ||||||||||| ||||| || || || |||||| ||||||| Sbjct 130225 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTGC 130166 Query 162453 ATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCC 162512 ||| |||| | ||||| || ||||| ||| || ||||||||||||| ||||| || Sbjct 130165 TTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 130106 Query 162513 TAGAGGTAACGCACTGTGAATGG 162535 | || ||||| || | ||||| Sbjct 130105 ACGTGGAAACGCTCT-TTAATGG 130084 >seq27014 Length=84001 Score = 224 bits (248), Expect = 1e-53 Identities = 268/360 (74%), Gaps = 4/360 (1%) Strand=Plus/Plus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || |||||||||||||||||||| || |||||| |||||||| || ||||| |||| Sbjct 19914 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTT 19973 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || |||| | || |||||| | || || ||| | | || || | ||||| Sbjct 19974 GCATATTCAACTCCTATTGCCGCTGCTACCGCAGTTTTCTTGATTTATCCAATAGGTCAA 20033 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 | ||| || |||| |||| |||| || || ||||||| || || | |||| ||||| Sbjct 20034 GCAAGTTTTTCTGATGATATGTCTCTAGGAATTTCTGGTA--TTCAATTTTATGATTGTA 20091 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 ||||| || || ||||| ||||||||||| || || |||||| | ||||| ||||| ||| Sbjct 20092 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20151 Query 160370 TTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGA 160429 |||| || || || || |||||||||||| || |||| | ||||||| | |||| Sbjct 20152 -TCGGCGGCTCCCT-ATCAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATCAGG 20209 Query 160430 GAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACT 160489 || || | ||||| ||| || || | ||||||| || |||||||||||||| ||| Sbjct 20210 GAAACCAAAGAAAATGAATCTGCTAATGAAGGTTACAGATTAGGTCAAGAGGAAGAAACT 20269 >seq32758 Length=53022 Score = 196 bits (216), Expect = 5e-45 Identities = 191/245 (78%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || |||||||||||||||||||| || |||||| | |||||| || ||||| |||| Sbjct 20943 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTT 20884 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||||| || || |||||| | || || ||| | | ||||| | ||||| Sbjct 20883 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 20824 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 || ||| || |||| ||||||||| || || ||||||||||| || | |||| |||| Sbjct 20823 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATG-ATGTA 20765 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 ||||| || || ||||| ||||||||||| || || |||||| | ||||| ||||| ||| Sbjct 20764 TTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20705 Query 160370 TTCGG 160374 ||||| Sbjct 20704 TTCGG 20700 >seq5280 Length=204759 Score = 154 bits (170), Expect = 2e-32 Identities = 187/255 (73%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 160343 TTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGA 160402 || |||||| | ||||| ||||| || ||||| || || || ||| | |||||||||| Sbjct 175408 TTTCACATGTTAGGTGTAGCTGGTGTGTTCGGCGGCTCCCTATTCAGTTCTATGCATGGT 175467 Query 160403 TCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGT 160462 || | || ||||||||| | | || || || ||| ||| ||| || | || | ||| Sbjct 175468 TCCTTTGTAACTTCTAGTTTGATTAGGGAAACCACATAAAATGAATCTGATAATGAAGGT 175527 Query 160463 TACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGT 160522 |||| ||| ||||||||||||| ||||| || ||||| || || ||||| || || || Sbjct 175528 TACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGA 175587 Query 160523 CGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCT 160582 || ||| ||||||||||||| || ||||||| || | | | || ||| | | | Sbjct 175588 CGATTGTTCTTCCAATATGCTAGTTTCAACAACTTTCGTTAATTAAAATTTTTCTTAGAT 175647 Query 160583 GCTTGGCCTGTTGTT 160597 |||||||||||||| Sbjct 175648 TCTTGGCCTGTTGTT 175662 >seq28127 Length=41111 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || |||||||||||||||||||| || |||||| | |||||| || ||||| |||| Sbjct 29546 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGATATGCGACCTTGGATTGCTGTT 29605 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||||| || || |||||| | || || ||| | | ||||| | ||||| Sbjct 29606 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 29665 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTA 160289 || ||| || |||| ||||||||| || || ||||||| Sbjct 29666 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTA 29705 >seq28567 Length=163623 Score = 104 bits (114), Expect = 3e-17 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 160589 CCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAAT 160648 ||||| || || || ||||| ||||| | ||| || || ||||| ||||| || ||| Sbjct 84167 CCTGTAGTGGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAAT 84108 Query 160649 GGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCA 160708 |||||||| |||||||| || | | || | |||||| || | || |||||| Sbjct 84107 GGTTTCAATTTCAACCAATCAGTAGTTGATAGCCAAGGGTGTGTAATTAATTCTTGGGAT 84048 Query 160709 GACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAAC 160768 || | ||||| | ||| | ||||||||||| ||||| || || || ||||| ||| Sbjct 84047 GA--TATTTAACTGTGCTAACCATGGCATGGAAGTTATGCATGAACGAAATGCTCATAAC 83990 Query 160769 TTCCCTCTCGACCTTGCTGCT 160789 |||||||| || || | |||| Sbjct 83989 TTCCCTCTAGATCTAGATGCT 83969 >seq21905 Length=358179 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 || ||| |||| |||||||| |||| || || || |||| || ||||| || Sbjct 14181 GACGATGCATATATCCTTGACACTGCAGAGTCTGCCGGAATTGATCTTCCATACTCTTGC 14240 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||||| |||||||| || || ||||| | | | |||| |||| || || || Sbjct 14241 AGGGCTGGTGCATGCTCTACCTGCGCAGGTAAAAGGGTGTCTGGTTCTGTTGACCAGTCG 14300 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || || || |||||||||||| | || || | || |||||||| || || Sbjct 14301 GATGGCTCGTTTCTTGATGATGATCAAATGGAGCAGGGCTACGTGCTGACCTGTGTCGCG 14360 Query 161140 TATCCCACTTCTGAT 161154 ||||| ||||| ||| Sbjct 14361 TATCCTACTTCCGAT 14375 >seq16835 Length=343710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 || ||||||||||||||| |||| || |||||| |||||||| || ||||| |||| Sbjct 191824 TACATGGGTCGTGAGTGGAAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGTTGTT 191765 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||||| || || |||||| | || || ||| | | ||||| | ||||| Sbjct 191764 GCATATTCAGCTCCTGTTGCCGCTGCTACCGCAGTTTTCTTGATTTACCCAATAGGTCAA 191705 Query 160250 GGTTCTTTCTCCGATGCTAT 160269 | ||| || |||| ||| Sbjct 191704 AGAAGTTTTTCTGATGGTAT 191685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548607044865600