Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq104964 232 1e-58 seq99948 232 1e-58 seq44579 232 1e-58 seq99270 75.2 2e-11 seq95495 75.2 2e-11 >seq104964 Length=6910 Score = 232 bits (256), Expect = 1e-58 Identities = 203/249 (82%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||| Sbjct 5286 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 5227 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | || | || || |||||| | ||| || ||||||| Sbjct 5226 TGGGATAACATGATAGGATTT-CGATCCTGTTCTGTTGGCCTTCGGGATCGGAGTAATGA 5168 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 5167 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 5108 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 5107 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 5049 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 5048 AGTTGGGGG 5040 >seq99948 Length=7592 Score = 232 bits (256), Expect = 1e-58 Identities = 203/249 (82%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||| Sbjct 1625 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 1684 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | || | || || |||||| | ||| || ||||||| Sbjct 1685 TGGGATAACATGATAGGATTT-CGATCCTGTTCTGTTGGCCTTCGGGATCGGAGTAATGA 1743 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 1744 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1803 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 1804 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 1862 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 1863 AGTTGGGGG 1871 >seq44579 Length=9620 Score = 232 bits (256), Expect = 1e-58 Identities = 203/249 (82%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||| Sbjct 8192 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 8133 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | || | || || |||||| | ||| || ||||||| Sbjct 8132 TGGGATAACATGATAGGATTT-CGATCCTGTTCTGTTGGCCTTCGGGATCGGAGTAATGA 8074 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 8073 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 8014 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 8013 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 7955 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 7954 AGTTGGGGG 7946 >seq99270 Length=5625 Score = 75.2 bits (82), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 || |||||| | | || ||| ||| | | ||||| || |||| | ||||||||||| Sbjct 5376 GTGATGATTGACAATGACAGTTGGGAGCATTCGTATTTCATAGTCAAATGTGAAATTCTT 5317 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| || ||||||| ||| ||| ||| || || | ||||||||||||||||| Sbjct 5316 GGATATACTGAAGACGAACAACTATAAAAATATTTGCCGATGATGTTTTCATTAATCA-A 5258 Query 303 GAACGAAAGTT 313 ||| ||| ||| Sbjct 5257 GAAAGAAGGTT 5247 >seq95495 Length=12049 Score = 75.2 bits (82), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 || |||||| | | || ||| ||| | | ||||| || |||| | ||||||||||| Sbjct 11449 GTGATGATTGACAATGACAGTTGGGAGCATTCGTATTTCATAGTCAAATGTGAAATTCTT 11508 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| || ||||||| ||| ||| ||| || || | ||||||||||||||||| Sbjct 11509 GGATATACTGAAGACGAACAACTATAAAAATATTTGCCGATGATGTTTTCATTAATCA-A 11567 Query 303 GAACGAAAGTT 313 ||| ||| ||| Sbjct 11568 GAAAGAAGGTT 11578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914220736000