Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq99948 237 7e-60 seq89527 237 7e-60 seq44579 237 7e-60 seq104964 104 1e-19 seq83760 86.0 3e-14 seq44585 86.0 3e-14 seq39811 86.0 3e-14 seq92498 82.4 3e-13 >seq99948 Length=7592 Score = 237 bits (262), Expect = 7e-60 Identities = 226/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| |||||| | Sbjct 3960 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGTGTA 4019 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||||| | || || ||| ||| | || |||| ||| | | |||| ||||| || Sbjct 4020 AACCCGCAAGGCGCAAGGAAGCTGA---GTGGCGGGATCCCCTCGTGGGTTGCACCGCCG 4076 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 4077 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 4136 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 4137 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 4196 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 4197 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 4239 Score = 165 bits (182), Expect = 3e-38 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| |||| ||| |||||||| | || || |||||| Sbjct 3578 CGAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 3637 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 3638 TATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 3697 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 3698 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 3738 >seq89527 Length=9871 Score = 237 bits (262), Expect = 7e-60 Identities = 226/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| |||||| | Sbjct 3014 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGTGTA 2955 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||||| | || || ||| ||| | || |||| ||| | | |||| ||||| || Sbjct 2954 AACCCGCAAGGCGCAAGGAAGCTGA---GTGGCGGGATCCCCTCGTGGGTTGCACCGCCG 2898 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 2897 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 2838 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 2837 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 2778 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 2777 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2735 Score = 165 bits (182), Expect = 3e-38 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| |||| ||| |||||||| | || || |||||| Sbjct 3396 CGAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 3337 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 3336 TATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 3277 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 3276 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 3236 >seq44579 Length=9620 Score = 237 bits (262), Expect = 7e-60 Identities = 226/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 |||||||||||| ||||||||||||||||||| |||| | ||||||| |||||| | Sbjct 5857 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGTGTA 5798 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 |||||| | || || ||| ||| | || |||| ||| | | |||| ||||| || Sbjct 5797 AACCCGCAAGGCGCAAGGAAGCTGA---GTGGCGGGATCCCCTCGTGGGTTGCACCGCCG 5741 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 5740 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 5681 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 5680 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 5621 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 5620 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 5578 Score = 165 bits (182), Expect = 3e-38 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| |||| ||| |||||||| | || || |||||| Sbjct 6239 CGAGTCGGGTTGTTTGGGAATGCAGCCCTAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 6180 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 6179 TATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 6120 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 6119 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 6079 >seq104964 Length=6910 Score = 104 bits (114), Expect = 1e-19 Identities = 191/277 (69%), Gaps = 16/277 (6%) Strand=Plus/Minus Query 410 CGTCTTGGAACACGGACCAAGGAGTCT-AACATCTATGCGAGTGTTTGGGTGTC-AAACC 467 ||||||| || |||||||||||||| | ||||| | || |||| |||||| ||| | Sbjct 2995 CGTCTTGAAAAACGGACCAAGGAGTTTTAACATGTTTGTGAGTCAACGGGTGTGTAAATC 2936 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCGACCGAT 526 | || | || ||||| | || || |||| ||||| ||||| Sbjct 2935 CATGAGG----TGCAAGTG---------GTATTCCTTTGTGGGTTGCACCGCCGACCAGC 2889 Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 | |||| | | || | ||| |||| |||||| || | ||||||| ||||||||||| Sbjct 2888 CTTGATCTTCTGAGAAGCATTCGAGTGTGAGCATGCCTATCGGGACCCAAAAGATGGTGA 2829 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 ||||||||| | | || |||||||| ||| || |||| | || | || | | || Sbjct 2828 ACTATGCCTAATTGAGGCAAAGCCAGAAGAAGCTTTGGTACATGCCCACAACAATATTGA 2769 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||| |||| | ||||||||||| |||| Sbjct 2768 CGTGCAAATCGTTCGTTTGACTTGGGTATAGGAGCGA 2732 Score = 80.6 bits (88), Expect = 1e-12 Identities = 113/154 (73%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGA-GGTAAATTTCTTCTAAAGCT-AAATATTGG 104 ||||||| ||||||| || |||| |||| |||||||| | || || ||| |||||| || Sbjct 3372 GTTGTTTTGGAATGCCGC-CTAATTGGGGCGGTAAATTCCGTCCAAGGCTTAAATATGGG 3314 Query 105 CCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGA 164 | || ||| ||| | ||||||| || ||||| ||||| |||||| ||||| Sbjct 3313 CGGGAAACCAATATTGTACAAGTACTACGAGGAAAAGAAGAAAATGACTTTGAAAAGAA- 3255 Query 165 GTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 | | | || | ||||||||||| |||||||| Sbjct 3254 -TCAGAGAGTGCTTGAAATTGTTGGGAGGGAAGC 3222 >seq83760 Length=15544 Score = 86.0 bits (94), Expect = 3e-14 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| ||||||||| ||| || | |||| || |||||||| | || || ||| | Sbjct 5619 CGAGTCGGGTTGTTTGGAAATACAACCCTAATCGGTTGGTAAATTCCGTCCAAGACTATA 5560 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| ||| ||||||||||||| | ||| | | | ||||||| ||| | |||| | Sbjct 5559 TATGGGCGAGAGACCGATAGCAAATAAGCACCGCAAGGGAAAGATATAAATGATTTTGAA 5500 Query 159 AAGAGAGTTAAA 170 |||||||| ||| Sbjct 5499 AAGAGAGTCAAA 5488 >seq44585 Length=10397 Score = 86.0 bits (94), Expect = 3e-14 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| ||||||||| ||| || | |||| || |||||||| | || || ||| | Sbjct 506 CGAGTCGGGTTGTTTGGAAATCCAACCCTAATCGGTTGGTAAATTCCGTCCAAGACTATA 447 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| ||| ||||||||||||| | ||| | | | ||||||| ||| | |||| | Sbjct 446 TATGGGCGAGAGACCGATAGCAAATAAGCACCGCAAGGGAAAGATATAAATGATTTTGAA 387 Query 159 AAGAGAGTTAAA 170 |||||||| ||| Sbjct 386 AAGAGAGTCAAA 375 >seq39811 Length=15465 Score = 86.0 bits (94), Expect = 3e-14 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| ||||||||| ||| || | |||| || |||||||| | || || ||| | Sbjct 14165 CGAGTCGGGTTGTTTGGAAATACAACCCTAATCGGTTGGTAAATTCCGTCCAAGACTATA 14106 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||| ||| ||||||||||||| | ||| | | | ||||||| ||| | |||| | Sbjct 14105 TATGGGCGAGAGACCGATAGCAAATAAGCACCGCAAGGGAAAGATATAAATGATTTTGAA 14046 Query 159 AAGAGAGTTAAA 170 |||||||| ||| Sbjct 14045 AAGAGAGTCAAA 14034 >seq92498 Length=1155 Score = 82.4 bits (90), Expect = 3e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| ||||||||||||||||||||| | || | || ||| |||||| ||||||| Sbjct 730 GGACCGGAAAGATGGTGAACTATGCCTAAGTATGAGAGCGCTAGATGAAACTTTGGTGGA 789 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 || |||||| | || |||| |||| | ||||| || ||| ||||| Sbjct 790 AGCCCGCAGCAATACTAACGTGAAAATTGTTCGTCTAACTTGAGTATA 837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2077704850000