Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq104964 298 9e-79 seq99948 298 9e-79 seq44579 298 9e-79 seq89527 291 1e-76 >seq104964 Length=6910 Score = 298 bits (330), Expect = 9e-79 Identities = 224/263 (85%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4536 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4595 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 4596 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 4655 Query 122 A------CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 | ||| || | |||| |||||||| | ||||||||||||||| ||| Sbjct 4656 GTGGAGGCTCACC----TCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 4711 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4712 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 4771 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| ||| |||||| Sbjct 4772 CAAGAAAGAGCTCTCAGTCTGTC 4794 >seq99948 Length=7592 Score = 298 bits (330), Expect = 9e-79 Identities = 224/263 (85%), Gaps = 10/263 (4%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2375 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2316 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 2315 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 2256 Query 122 A------CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 | ||| || | |||| |||||||| | ||||||||||||||| ||| Sbjct 2255 GTGGAGGCTCACC----TCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 2200 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2199 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 2140 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| ||| |||||| Sbjct 2139 CAAGAAAGAGCTCTCAGTCTGTC 2117 >seq44579 Length=9620 Score = 298 bits (330), Expect = 9e-79 Identities = 224/263 (85%), Gaps = 10/263 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7442 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7501 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 7502 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 7561 Query 122 A------CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 | ||| || | |||| |||||||| | ||||||||||||||| ||| Sbjct 7562 GTGGAGGCTCACC----TCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 7617 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 7618 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 7677 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| ||| |||||| Sbjct 7678 CAAGAAAGAGCTCTCAGTCTGTC 7700 >seq89527 Length=9871 Score = 291 bits (322), Expect = 1e-76 Identities = 220/259 (85%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4599 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4658 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || ||| | |||||||||||||||||| ||| Sbjct 4659 CCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCATAGTCCCTCTAAGAAGCTAGCT 4718 Query 122 A------CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGG 175 | ||| || | |||| |||||||| | ||||||||||||||| ||| Sbjct 4719 GTGGAGGCTCACC----TCCACATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGG 4774 Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4775 AATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 4834 Query 236 CAAGAAAGAGCTATCAATC 254 |||||||||||| ||| || Sbjct 4835 CAAGAAAGAGCTCTCAGTC 4853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795974067000