Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq104964 123 3e-26 seq99948 123 3e-26 seq44579 123 3e-26 >seq104964 Length=6910 Score = 123 bits (136), Expect = 3e-26 Identities = 139/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 5286 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 5227 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | || | || || ||| || | ||| || |||||| Sbjct 5226 TGGGATAACATGATAGGATTT-CGATCCTGTTCTGTTGGCCTTCGGGATCGGA-GTAATG 5169 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 5168 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 5109 Query 189 AT 190 || Sbjct 5108 AT 5107 >seq99948 Length=7592 Score = 123 bits (136), Expect = 3e-26 Identities = 139/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 1625 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 1684 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | || | || || ||| || | ||| || |||||| Sbjct 1685 TGGGATAACATGATAGGATTT-CGATCCTGTTCTGTTGGCCTTCGGGATCGGA-GTAATG 1742 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 1743 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 1802 Query 189 AT 190 || Sbjct 1803 AT 1804 >seq44579 Length=9620 Score = 123 bits (136), Expect = 3e-26 Identities = 139/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 8192 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCA 8133 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | || | || || ||| || | ||| || |||||| Sbjct 8132 TGGGATAACATGATAGGATTT-CGATCCTGTTCTGTTGGCCTTCGGGATCGGA-GTAATG 8075 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 8074 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 8015 Query 189 AT 190 || Sbjct 8014 AT 8013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511469280000