Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq104964 298 1e-78 seq99948 298 1e-78 seq89527 298 1e-78 seq44579 298 1e-78 >seq104964 Length=6910 Score = 298 bits (330), Expect = 1e-78 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | ||||||||||||||||||||||||||| Sbjct 4650 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 4591 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 4590 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATA 4531 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 4530 GCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 4472 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||| |||||||||| ||| ||||||||| ||||||||| |||||||| Sbjct 4471 GCAATTGTTGGTCTTAAACGAGGAATTCCTTGTAAGCGCGAGTCATCAGCTCGCGTTGAC 4412 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 4411 TACGTCCCTGCCCTTTGTA 4393 >seq99948 Length=7592 Score = 298 bits (330), Expect = 1e-78 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | ||||||||||||||||||||||||||| Sbjct 2261 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 2320 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 2321 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATA 2380 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 2381 GCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 2439 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||| |||||||||| ||| ||||||||| ||||||||| |||||||| Sbjct 2440 GCAATTGTTGGTCTTAAACGAGGAATTCCTTGTAAGCGCGAGTCATCAGCTCGCGTTGAC 2499 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 2500 TACGTCCCTGCCCTTTGTA 2518 >seq89527 Length=9871 Score = 298 bits (330), Expect = 1e-78 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | ||||||||||||||||||||||||||| Sbjct 4713 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 4654 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 4653 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATA 4594 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 4593 GCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 4535 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||| |||||||||| ||| ||||||||| ||||||||| |||||||| Sbjct 4534 GCAATTGTTGGTCTTAAACGAGGAATTCCTTGTAAGCGCGAGTCATCAGCTCGCGTTGAC 4475 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 4474 TACGTCCCTGCCCTTTGTA 4456 >seq44579 Length=9620 Score = 298 bits (330), Expect = 1e-78 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | || || | | ||||||||||||||||||||||||||| Sbjct 7556 GCTTCTTAGAGGGACTATGGCCTTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGT 7497 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| || Sbjct 7496 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTATA 7437 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 7436 GCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 7378 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||| |||||||||| ||| ||||||||| ||||||||| |||||||| Sbjct 7377 GCAATTGTTGGTCTTAAACGAGGAATTCCTTGTAAGCGCGAGTCATCAGCTCGCGTTGAC 7318 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 7317 TACGTCCCTGCCCTTTGTA 7299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946186496000