Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Embelia_20ribes_20[genbank_20GCA_5F001753735.1_202016-10-06] 107,000 sequences; 660,509,584 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq104964 590 2e-166 seq99948 590 2e-166 seq71695 590 2e-166 seq44579 590 2e-166 seq37941 179 1e-42 seq101601 147 7e-33 seq57756 120 9e-25 seq26421 120 9e-25 >seq104964 Length=6910 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||| |||| |||||||||||||||||| Sbjct 5509 GTACTCATTCCAATTACCAGACTTTTTA-AGCCCGGTATTGTTATTTATTGTCACTACCT 5567 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5568 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5627 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 5628 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 5687 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 5688 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCATCGTCAGCG 5747 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG---AAGG---G 293 ||| |||||| |||| || |||||| |||||||| || || | || |||| | Sbjct 5748 CAATGGCCATACGATCTGTCGAGTTATCATGAATCATCA--GAACAACGAGCAAGGCCCG 5805 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 5806 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 5865 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 5866 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAACTGA 5924 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 5925 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 5984 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 5985 TAATCTTTGAGACAAGCATATGACTACTGGCAG 6017 >seq99948 Length=7592 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||| |||| |||||||||||||||||| Sbjct 1402 GTACTCATTCCAATTACCAGACTTTTTA-AGCCCGGTATTGTTATTTATTGTCACTACCT 1344 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1343 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1284 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 1283 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1224 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 1223 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCATCGTCAGCG 1164 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG---AAGG---G 293 ||| |||||| |||| || |||||| |||||||| || || | || |||| | Sbjct 1163 CAATGGCCATACGATCTGTCGAGTTATCATGAATCATCA--GAACAACGAGCAAGGCCCG 1106 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 1105 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 1046 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 1045 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAACTGA 987 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 986 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 927 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 926 TAATCTTTGAGACAAGCATATGACTACTGGCAG 894 >seq71695 Length=2579 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||| |||| |||||||||||||||||| Sbjct 1178 GTACTCATTCCAATTACCAGACTTTTTA-AGCCCGGTATTGTTATTTATTGTCACTACCT 1236 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1237 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1296 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 1297 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 1356 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 1357 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCATCGTCAGCG 1416 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG---AAGG---G 293 ||| |||||| |||| || |||||| |||||||| || || | || |||| | Sbjct 1417 CAATGGCCATACGATCTGTCGAGTTATCATGAATCATCA--GAACAACGAGCAAGGCCCG 1474 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 1475 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 1534 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 1535 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAACTGA 1593 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 1594 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 1653 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 1654 TAATCTTTGAGACAAGCATATGACTACTGGCAG 1686 >seq44579 Length=9620 Score = 590 bits (654), Expect = 2e-166 Identities = 444/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||| |||| |||||||||||||||||| Sbjct 8415 GTACTCATTCCAATTACCAGACTTTTTA-AGCCCGGTATTGTTATTTATTGTCACTACCT 8473 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8474 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 8533 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 8534 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 8593 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || Sbjct 8594 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCATCGTCAGCG 8653 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG---AAGG---G 293 ||| |||||| |||| || |||||| |||||||| || || | || |||| | Sbjct 8654 CAATGGCCATACGATCTGTCGAGTTATCATGAATCATCA--GAACAACGAGCAAGGCCCG 8711 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 8712 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 8771 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 8772 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAACTGA 8830 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 8831 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 8890 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 8891 TAATCTTTGAGACAAGCATATGACTACTGGCAG 8923 >seq37941 Length=4870 Score = 179 bits (198), Expect = 1e-42 Identities = 172/218 (79%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||| |||||| |||| | |||| |||| | |||||||||| | || | Sbjct 216 GTACTCATTCTAATTACCAGACTTTTTA-AGCCTAGTATTATTATTTATTGTTGCAAC-T 159 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | | |||| ||||| ||||||||| |||||| |||||||| || ||||| ||||| ||| Sbjct 158 CTCTGTGTTAGGATTAGGTAATTTGTGCGCCTCCTGCCTTCATTAGATGTAGTAGCTGTT 99 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| |||||||| |||||||||||| ||| || ||| || || |||| | Sbjct 98 TCTCAGGCCCCCTCTCCAAAATCGAACCCTATTTCTTAGTCACCAATTACCACAATGGCA 39 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||||| ||| | |||||||||||||||||||||||| Sbjct 38 GGCCACAATCTAATCATCGAAAGTTGATAGGGCAGAAA 1 >seq101601 Length=7631 Score = 147 bits (162), Expect = 7e-33 Identities = 133/166 (80%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 55 CTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTA 114 ||||| || ||| |||| ||||||||||| || ||| |||||||||||||||| | Sbjct 900 CTACCACCTGGTGATAGGATAGGGTAATTTGCACGGTTGCAACCTTCCTTGGATGTGGAA 841 Query 115 GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACC 174 ||||||| |||||||||||||| |||||||| ||||| || ||||||||| ||| Sbjct 840 ACCGTTTCCCAGGCTCCCTCTCCAGAATCGAATCCTAAGTCTATGTTACCCGTCACCACC 781 Query 175 ATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220 || |||||||| ||||||||| |||| |||||||||| ||||| Sbjct 780 ATCATAGGCCACAATCCTACCAATGAAA-TTGATAGGGCTCAAATT 736 >seq57756 Length=22080 Score = 120 bits (132), Expect = 9e-25 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||| |||| Sbjct 17719 ATTGGGTAATTTGCATGCCTGCTACCTTCCTTGGATGTGATAGCCATTTCTCAGGTTCCC 17778 Query 133 TCTCCGGAATCGAACCCTAATTCCCC 158 ||||| ||||||||||||||||| || Sbjct 17779 TCTCCAGAATCGAACCCTAATTCTCC 17804 >seq26421 Length=10636 Score = 120 bits (132), Expect = 9e-25 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||| |||| Sbjct 6275 ATTGGGTAATTTGCATGCCTGCTACCTTCCTTGGATGTGATAGCCATTTCTCAGGTTCCC 6334 Query 133 TCTCCGGAATCGAACCCTAATTCCCC 158 ||||| ||||||||||||||||| || Sbjct 6335 TCTCCAGAATCGAACCCTAATTCTCC 6360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508783872000