Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2212 201 3e-49 seq1969 197 4e-48 seq1942 122 2e-25 seq528 120 8e-25 >seq2212 Length=525671 Score = 201 bits (222), Expect = 3e-49 Identities = 247/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 464193 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 464134 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 464133 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 464077 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 464076 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 464020 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | |||||| |||| || Sbjct 464019 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGC 463960 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| |||||| Sbjct 463959 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGG 463900 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 463899 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 463866 Score = 125 bits (138), Expect = 2e-26 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 119289 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 119230 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 119229 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 119170 Query 123 GAAATCCCCGGGCTTAACC 141 ||||||| ||||| |||| Sbjct 119169 CAAATCCCAGGGCTCAACC 119151 Score = 118 bits (130), Expect = 3e-24 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 6796 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 6737 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||| | |||| || || |||||||| Sbjct 6736 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAACTAGGGGGGCGAATGGGATTAGA 6677 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368 ||||| ||||||| ||| |||||||| ||||| | || | | | || || Sbjct 6676 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGC 6617 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 6616 AGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 6575 Score = 118 bits (130), Expect = 3e-24 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 225424 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 225483 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||| | |||| || || |||||||| Sbjct 225484 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAACTAGGGGGGCGAATGGGATTAGA 225543 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368 ||||| ||||||| ||| |||||||| ||||| | || | | | || || Sbjct 225544 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGC 225603 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 225604 AGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 225645 >seq1969 Length=1425041 Score = 197 bits (218), Expect = 4e-48 Identities = 241/329 (73%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 1424713 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 1424772 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 1424773 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 1424832 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 1424833 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 1424892 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | || ||| |||||||||||||| || | | ||||||||| || Sbjct 1424893 GGCAGAGGGAATTTCCGGTAGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 1424952 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 1424953 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 1425012 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTA 331 |||||||||||| ||||||| ||| || Sbjct 1425013 GATTAGATACCCCAGTAGTCCTAGCCGTA 1425041 >seq1942 Length=1573146 Score = 122 bits (134), Expect = 2e-25 Identities = 204/294 (69%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 44 GCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGC 103 ||||||| | | ||| |||||| |||| |||||| | |||||||| | ||| | ||| Sbjct 1175287 GCGGTAAGATGGAGGATGCAAGTGTTATCCGGAATGATTGGGCGTACAACGTCTGTAGGT 1175346 Query 104 GGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGC 163 || | | |||| | | | ||||||| ||||| |||| ||| || | ||| | Sbjct 1175347 GGCTTTTTAAGTCCGTCATCAAATCCCAGGGCTCAACCCTGGACAGGCGGTAAAAACTAC 1175406 Query 164 ACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATA 223 || |||| | || || | |||||| ||| ||| |||||||| | ||| | Sbjct 1175407 CAAGCTGGAGTATAGTAGGGGTAGAGGGAATTTATGGTGGAGCGGTGAAATGTGCAGAGA 1175466 Query 224 TGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGA 283 | | | ||||||||| |||||| ||| ||||| | |||||| || | |||| Sbjct 1175467 TTGGAAAGAACACCAACGGCGAAAGCACTTTGCTGGGCCGAGACTGACACTGAGAGACGA 1175526 Query 284 AAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| || ||||||||||||| ||||||| ||| |||||||| Sbjct 1175527 AAGCGAGGGGAGCGAATGGGATTAGATACCC-AGTAGTCCTAGCCATAAACGAT 1175579 >seq528 Length=404557 Score = 120 bits (132), Expect = 8e-25 Identities = 259/379 (68%), Gaps = 15/379 (4%) Strand=Plus/Plus Query 39 CAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCG 98 |||| ||||||| | ||| |||||| |||| |||||| | |||||||| | ||| Sbjct 134705 CAGCTGCGGTAAGATAGAGGATGCAAGTGTTATCCGGAATGATTGGGCGTACAACGTCTT 134764 Query 99 CAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG 158 ||| || | | |||| | | | ||||||| ||||| |||| ||| || | Sbjct 134765 TAGGTGGCTTTTTAAGTCCGTCATCAAATCCCAGGGCTCAACCCTGGACAGGCGGTAAAA 134824 Query 159 ACTGCACGACTAGAGTGTGTCAG-AGGGG--GGTGGAATTCCACGTGTAGCAGTGAAATG 215 ||| | | |||| ||| ||||| | |||||| ||| ||| |||||||| Sbjct 134825 ACTACCATGTTGGAGTA---CAGTAGGGGTAGAGGGAATTTATGGTGGAGCGGTGAAATG 134881 Query 216 CGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTC 275 || ||| || | ||||||||||| |||||| ||| ||||| | |||||| || Sbjct 134882 CGCAGAGATTGGAAGGAACACCAACGGCGAAAGCACTTTGCTGGGCCGAGACTGACACTG 134941 Query 276 ATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACG 335 | |||||||| ||||||| || ||||||||||||| ||||||| ||| |||||| Sbjct 134942 AGAGACGAAAGCAAGGGGAGCGAATGGGATTAGATACCC-AGTAGTCCTAGCCGTAAACG 135000 Query 336 ATATCAACTAG---TTGTTGGGGATTTACTTCCTTG--GTAACGTAGCTAACGCGTGAAG 390 || ||||| || || | || || || || || ||||||||||||| ||| Sbjct 135001 ATGGATACTAGGCACTG-TGCGTATCGAC--CCGTGCAGTGTTGTAGCTAACGCGTTAAG 135057 Query 391 TTGACCGCCTGGGGAATAC 409 | |||||| |||| ||| Sbjct 135058 TATCCCGCCTTGGGAGTAC 135076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289571474048