Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2212 152 7e-35 seq2166 96.9 5e-18 seq183 96.9 5e-18 seq83 86.0 9e-15 seq149 82.4 1e-13 seq274 77.0 5e-12 >seq2212 Length=525671 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 3773 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 3715 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 3714 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 3657 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 3656 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 3606 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 3605 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 3546 Query 246 GTA 248 ||| Sbjct 3545 GTA 3543 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 228447 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 228505 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 228506 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 228563 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 228564 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 228614 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 228615 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 228674 Query 246 GTA 248 ||| Sbjct 228675 GTA 228677 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 154257 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 154315 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 154316 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 154362 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 154363 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 154416 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 154417 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 154476 Query 246 GTA 248 ||| Sbjct 154477 GTA 154479 >seq2166 Length=3510597 Score = 96.9 bits (106), Expect = 5e-18 Identities = 87/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||| ||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 154170 GGCATCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 154111 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| ||| |||||||||||| |||| Sbjct 154110 CATGCCCCTAGGTATTCTCTACCT-ACCCACTGTGTCGGTTTCGGGTA 154064 >seq183 Length=716765 Score = 96.9 bits (106), Expect = 5e-18 Identities = 88/109 (81%), Gaps = 3/109 (3%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||| || || ||||||||||| | |||||||||| |||||||| | |||| | Sbjct 90654 GGCACCCCCTCACCTGAAGTTACGGGACAATTTTGCCGAGTTCCTTAAAGAGAGTTGTCT 90713 Query 201 CGAACGC-CTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||||||||| |||| |||||||||| ||||| |||| Sbjct 90714 C--ACGCACTTAGTATTCTCGACCTACCCACCTGTGTTGGTTTCGGGTA 90760 >seq83 Length=810285 Score = 86.0 bits (94), Expect = 9e-15 Identities = 87/110 (79%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| || |||||||||||||| | |||||||||| |||||||| | |||| | Sbjct 685779 GGCACCCTCTCACCCGAAGTTACGGGACAATTTTGCCGAGTTCCTTAAAGAGAGTTGTCT 685720 Query 201 CGAACGC-CTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||| ||||| |||||| |||| ||||||||||| |||| |||| Sbjct 685719 CG--CGCACTTAGGTATTCTTGACCTACCCACCTGTGTCAGTTTCGGGTA 685672 >seq149 Length=2637241 Score = 82.4 bits (90), Expect = 1e-13 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||| ||||||||||| |||| | |||||||| || |||| | |||| | Sbjct 3062 GGCACCCCTTTTCCCGAAGTTATAGGGCTACTTTGCCGAGTTTCTTAGAAATAGTTGTCT 3121 Query 201 CGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||||| ||||||||||||| |||||||| ||||||| |||| Sbjct 3122 TGTGC-CCTTAGGTATTCTCTACCTACCCACCTGTATCGGTTTTGGGTA 3169 >seq274 Length=581095 Score = 77.0 bits (84), Expect = 5e-12 Identities = 86/114 (75%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 130 TCACCAGCA-GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAA 188 |||||| || | |||| || |||| ||||||||||||| | |||||||||| ||||| || Sbjct 101619 TCACCAACAAGAGGCAACCTTTCTTCCGAAGTTACGGGTCTATTTTGCCGAGTTCCTCAA 101678 Query 189 CCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | |||| | | ||| |||||||||||||| | | |||||||| || Sbjct 101679 AGAGAGTTGTCTTGGTTCCCTAGGTATTCTCTACCTGCCTCCTTGTGTCGGCTT 101732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694385119876