Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02]
2,212 sequences; 322,166,964 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq2212 152 7e-35
seq2166 96.9 5e-18
seq183 96.9 5e-18
seq83 86.0 9e-15
seq149 82.4 1e-13
seq274 77.0 5e-12
>seq2212
Length=525671
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 3773 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 3715
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 3714 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 3657
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3656 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 3606
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 3605 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 3546
Query 246 GTA 248
|||
Sbjct 3545 GTA 3543
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 228447 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 228505
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 228506 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 228563
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 228564 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 228614
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 228615 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 228674
Query 246 GTA 248
|||
Sbjct 228675 GTA 228677
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 154257 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 154315
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 154316 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 154362
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 154363 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 154416
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 154417 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 154476
Query 246 GTA 248
|||
Sbjct 154477 GTA 154479
>seq2166
Length=3510597
Score = 96.9 bits (106), Expect = 5e-18
Identities = 87/108 (81%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||| ||||||||||||||||||||||| |||||||||| ||||||| | |||| |
Sbjct 154170 GGCATCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 154111
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||| ||||||||||||| ||| |||||||||||| ||||
Sbjct 154110 CATGCCCCTAGGTATTCTCTACCT-ACCCACTGTGTCGGTTTCGGGTA 154064
>seq183
Length=716765
Score = 96.9 bits (106), Expect = 5e-18
Identities = 88/109 (81%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||| || || ||||||||||| | |||||||||| |||||||| | |||| |
Sbjct 90654 GGCACCCCCTCACCTGAAGTTACGGGACAATTTTGCCGAGTTCCTTAAAGAGAGTTGTCT 90713
Query 201 CGAACGC-CTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| |||| |||||||||||| |||| |||||||||| ||||| ||||
Sbjct 90714 C--ACGCACTTAGTATTCTCGACCTACCCACCTGTGTTGGTTTCGGGTA 90760
>seq83
Length=810285
Score = 86.0 bits (94), Expect = 9e-15
Identities = 87/110 (79%), Gaps = 4/110 (4%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||| || |||||||||||||| | |||||||||| |||||||| | |||| |
Sbjct 685779 GGCACCCTCTCACCCGAAGTTACGGGACAATTTTGCCGAGTTCCTTAAAGAGAGTTGTCT 685720
Query 201 CGAACGC-CTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| ||| ||||| |||||| |||| ||||||||||| |||| ||||
Sbjct 685719 CG--CGCACTTAGGTATTCTTGACCTACCCACCTGTGTCAGTTTCGGGTA 685672
>seq149
Length=2637241
Score = 82.4 bits (90), Expect = 1e-13
Identities = 85/109 (78%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|||||||||| ||||||||||| |||| | |||||||| || |||| | |||| |
Sbjct 3062 GGCACCCCTTTTCCCGAAGTTATAGGGCTACTTTGCCGAGTTTCTTAGAAATAGTTGTCT 3121
Query 201 CGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | ||||| ||||||||||||| |||||||| ||||||| ||||
Sbjct 3122 TGTGC-CCTTAGGTATTCTCTACCTACCCACCTGTATCGGTTTTGGGTA 3169
>seq274
Length=581095
Score = 77.0 bits (84), Expect = 5e-12
Identities = 86/114 (75%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 130 TCACCAGCA-GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAA 188
|||||| || | |||| || |||| ||||||||||||| | |||||||||| ||||| ||
Sbjct 101619 TCACCAACAAGAGGCAACCTTTCTTCCGAAGTTACGGGTCTATTTTGCCGAGTTCCTCAA 101678
Query 189 CCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| |||| | | ||| |||||||||||||| | | |||||||| ||
Sbjct 101679 AGAGAGTTGTCTTGGTTCCCTAGGTATTCTCTACCTGCCTCCTTGTGTCGGCTT 101732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694385119876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |