Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02]
2,212 sequences; 322,166,964 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq2212 264 3e-68
seq528 154 4e-35
seq2166 84.2 6e-14
seq273 75.2 3e-11
>seq2212
Length=525671
Score = 264 bits (292), Expect = 3e-68
Identities = 307/418 (73%), Gaps = 27/418 (6%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 154067 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 154126
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154127 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 154186
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| |||||||||||| || ||| | | | || | |||
Sbjct 154187 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 154246
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 154247 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 154306
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 154307 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 154360
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| ||| | ||||||||||||||||||| || ||
Sbjct 154361 CTTTGTGAG-----------------GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATT 154403
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 154404 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 154461
Score = 242 bits (268), Expect = 9e-62
Identities = 301/414 (73%), Gaps = 25/414 (6%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 3959 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 3900
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 3899 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3840
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||| ||| || | ||| | |||||
Sbjct 3839 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGC--------AACTAAC 3788
Query 187 CC--CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244
| | | ||||||| |||||||||||| |||| || |||||| || || |
Sbjct 3787 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 3728
Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304
|| ||||||| ||||||||||||||||||||||| | |||||||| | | | |
Sbjct 3727 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 3668
Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364
| | | | || || |||| ||||||||||||||||||| |
Sbjct 3667 TAATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGT 3623
Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
| ||||||| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 3622 CATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 3569
Score = 242 bits (268), Expect = 9e-62
Identities = 301/414 (73%), Gaps = 25/414 (6%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 228261 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 228320
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 228321 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 228380
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||| ||| || | ||| | |||||
Sbjct 228381 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGC--------AACTAAC 228432
Query 187 CC--CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244
| | | ||||||| |||||||||||| |||| || |||||| || || |
Sbjct 228433 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 228492
Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304
|| ||||||| ||||||||||||||||||||||| | |||||||| | | | |
Sbjct 228493 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 228552
Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364
| | | | || || |||| ||||||||||||||||||| |
Sbjct 228553 TAATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGT 228597
Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
| ||||||| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 228598 CATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 228651
>seq528
Length=404557
Score = 154 bits (170), Expect = 4e-35
Identities = 125/150 (83%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 133718 GCATCTTCACGGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 133659
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| |||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 133658 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGG-ATTTCACTACCTTTGGACCGTTA 133600
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCG 162
| |||||| |||||||| |||||||| |||
Sbjct 133599 TAGTTACGACCGCCGTTCACCGGGGCATCG 133570
>seq2166
Length=3510597
Score = 84.2 bits (92), Expect = 6e-14
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402
||||||||||||||||||| || ||||||| |||||||| ||||| ||||| ||
Sbjct 154164 CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCATGCC 154105
Query 403 CCTTGGTATTCTCTACCCAACCAC 426
||| ||||||||||||| | ||||
Sbjct 154104 CCTAGGTATTCTCTACCTACCCAC 154081
>seq273
Length=2571979
Score = 75.2 bits (82), Expect = 3e-11
Identities = 91/124 (73%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74
||||||||| || ||||||||||| | | | | |||||||| || || | |||
Sbjct 67464 ATCTTCACAAAGAATTCAATTTCACCGGGATTACGTTGGAGACAACGGAGCAGTTGTTGT 67405
Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134
||||||| || |||| ||||| |||||||||| ||| ||||| || ||| ||||
Sbjct 67404 AGCATTCGTACATGTCGCTACTTATGCGACAAGGAAATTCACTACCCTATGACAGTTAGG 67345
Query 135 GTTA 138
||||
Sbjct 67344 GTTA 67341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260772111104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |