Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2212 336 5e-90 seq528 174 3e-41 seq2166 96.9 7e-18 seq183 80.6 6e-13 seq83 77.0 7e-12 >seq2212 Length=525671 Score = 336 bits (372), Expect = 5e-90 Identities = 289/355 (81%), Gaps = 12/355 (3%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 154067 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 154126 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154127 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 154186 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 154187 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 154246 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 154247 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 154306 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----TGT 297 || || ||||||||||||||||||||||||| |||||| || ||||| || ||| Sbjct 154307 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 154366 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | ||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 154367 GAGGG---GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 154418 Score = 264 bits (292), Expect = 2e-68 Identities = 284/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 3959 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 3900 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 3899 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3840 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| |||| || |||| || ||||| Sbjct 3839 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGC--------AACTAAC 3788 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 3787 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 3728 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 3727 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 3668 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 3667 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 3608 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 3607 CTTCGACATGGTTCTC 3592 Score = 264 bits (292), Expect = 2e-68 Identities = 284/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 228261 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 228320 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 228321 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 228380 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| |||| || |||| || ||||| Sbjct 228381 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGC--------AACTAAC 228432 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 228433 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 228492 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 228493 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 228552 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 228553 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 228612 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 228613 CTTCGACATGGTTCTC 228628 >seq528 Length=404557 Score = 174 bits (192), Expect = 3e-41 Identities = 127/146 (87%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 133718 GCATCTTCACGGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 133659 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| Sbjct 133658 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGG-ATTTCACTACCTTTGGACCGTTA 133600 Query 127 TAGTTACGGCCGCCGTTTACTGGGGC 152 |||||||| |||||||| || ||||| Sbjct 133599 TAGTTACGACCGCCGTTCACCGGGGC 133574 >seq2166 Length=3510597 Score = 96.9 bits (106), Expect = 7e-18 Identities = 102/134 (76%), Gaps = 8/134 (6%) Strand=Plus/Minus Query 224 TACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTAT 283 ||||| | ||| |||||| || || || ||||||||||||||||||| || | |||| Sbjct 154254 TACATGGACTTACGACTTTGCGGAGACTTGTGTTTTTGGTAAACAGTTGCCCGAGCCTGG 154195 Query 284 TCTCTGCGGCC-----TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTT 338 | ||| | || ||| | | |||| |||||||||| ||||||||||| |||| Sbjct 154194 TTACTGTGACCCCCTTTGTGAGGG---GGCATCCCTTCTCCCGAAGTTACGGGGCTATTT 154138 Query 339 TGCCGAGTTCCTTA 352 |||||||||||||| Sbjct 154137 TGCCGAGTTCCTTA 154124 >seq183 Length=716765 Score = 80.6 bits (88), Expect = 6e-13 Identities = 87/114 (76%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 252 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC-AGGCAC 310 |||||||||||||||||||||| |||||| || |||| || | | |||||| Sbjct 90599 TGTGTTTTTGGTAAACAGTCGCACGGGCCTCGTCACTGCAACCCCTTTGTGCGGAGGCAC 90658 Query 311 CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||| || || |||||||||| ||||||||||||||||||| | |||| || Sbjct 90659 CCCCTCACCTGAAGTTACGGGACAATTTTGCCGAGTTCCTTAAAGAGAGTTGTC 90712 >seq83 Length=810285 Score = 77.0 bits (84), Expect = 7e-12 Identities = 86/114 (75%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 252 TGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC-AGGCAC 310 ||||||||||||||||||| | ||||| || ||||| || | || |||||| Sbjct 685834 TGTGTTTTTGGTAAACAGTTGTCCAGGCCTCGTCACTGCGACCCCTTTGTGAGGAGGCAC 685775 Query 311 CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 || || ||| |||||||||| ||||||||||||||||||| | |||| || Sbjct 685774 CCTCTCACCCGAAGTTACGGGACAATTTTGCCGAGTTCCTTAAAGAGAGTTGTC 685721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062376499712