Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1969 208 2e-51 seq2212 203 7e-50 seq941 134 3e-29 seq730 100 6e-19 >seq1969 Length=1425041 Score = 208 bits (230), Expect = 2e-51 Identities = 149/169 (88%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 1424656 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 1424598 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | |||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 1424597 C-GTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 1424539 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || |||| |||||||||| ||| ||| ||||||||||||||||||| || Sbjct 1424538 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGA 1424490 >seq2212 Length=525671 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 464228 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 464285 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 464286 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 464345 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||| ||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 464346 AGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 464405 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 464406 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 464445 >seq941 Length=178831 Score = 134 bits (148), Expect = 3e-29 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||| |||||| ||||| |||||||||||||| ||||||| | ||||| ||| || Sbjct 106332 TCAGACTTTCGTTCATTGCAGAATATTCCCCACTGATGCCTCCTGAAGGAGACTGAGTCG 106391 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||| | |||||||| ||||||| ||||||||| || ||| ||| || ||| || Sbjct 106392 TGTCTCAATCCCAGTGTGGTTGATCATTCTCTCAGACAAGCTACTGATTATCATCTTAGT 106451 Query 167 GAGCCATTACCTCACCAACTAGCTAAT 193 ||| ||| |||||||||||||||||| Sbjct 106452 AAGCTATTGCCTCACCAACTAGCTAAT 106478 >seq730 Length=252822 Score = 100 bits (110), Expect = 6e-19 Identities = 105/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||||||| |||||| | || | ||||||||| ||| |||| || |||||||| || Sbjct 153655 AAAATTCCCCTTTGCTGCTTTCCATTGGAGTCTGGGTCGTATCTCGGTCCCAGTGTGGCT 153596 Query 128 GATCATCC-----TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 |||||||| |||| ||| || ||| ||| || | || || ||| ||| ||||||| Sbjct 153595 GATCATCCGATCCTCTCGGACTAGCTACA-ATCTTCACTTTAGTAAGCTATTGCCTCACC 153537 Query 183 AACTAGCTAATCCGACC 199 ||||| |||||| |||| Sbjct 153536 AACTATCTAATCAGACC 153520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071976287360