Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02]
2,212 sequences; 322,166,964 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq1969 208 2e-51
seq2212 203 7e-50
seq941 134 3e-29
seq730 100 6e-19
>seq1969
Length=1425041
Score = 208 bits (230), Expect = 2e-51
Identities = 149/169 (88%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 1424656 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 1424598
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
| |||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 1424597 C-GTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 1424539
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||
Sbjct 1424538 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGA 1424490
>seq2212
Length=525671
Score = 203 bits (224), Expect = 7e-50
Identities = 179/220 (81%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 464228 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 464285
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 464286 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 464345
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||| ||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 464346 AGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 464405
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 464406 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 464445
>seq941
Length=178831
Score = 134 bits (148), Expect = 3e-29
Identities = 118/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|||| |||||| ||||| |||||||||||||| ||||||| | ||||| ||| ||
Sbjct 106332 TCAGACTTTCGTTCATTGCAGAATATTCCCCACTGATGCCTCCTGAAGGAGACTGAGTCG 106391
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166
||||||| | |||||||| ||||||| ||||||||| || ||| ||| || ||| ||
Sbjct 106392 TGTCTCAATCCCAGTGTGGTTGATCATTCTCTCAGACAAGCTACTGATTATCATCTTAGT 106451
Query 167 GAGCCATTACCTCACCAACTAGCTAAT 193
||| ||| ||||||||||||||||||
Sbjct 106452 AAGCTATTGCCTCACCAACTAGCTAAT 106478
>seq730
Length=252822
Score = 100 bits (110), Expect = 6e-19
Identities = 105/137 (77%), Gaps = 6/137 (4%)
Strand=Plus/Minus
Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127
|| ||||||| |||||| | || | ||||||||| ||| |||| || |||||||| ||
Sbjct 153655 AAAATTCCCCTTTGCTGCTTTCCATTGGAGTCTGGGTCGTATCTCGGTCCCAGTGTGGCT 153596
Query 128 GATCATCC-----TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182
|||||||| |||| ||| || ||| ||| || | || || ||| ||| |||||||
Sbjct 153595 GATCATCCGATCCTCTCGGACTAGCTACA-ATCTTCACTTTAGTAAGCTATTGCCTCACC 153537
Query 183 AACTAGCTAATCCGACC 199
||||| |||||| ||||
Sbjct 153536 AACTATCTAATCAGACC 153520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071976287360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |