Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2212 264 4e-68 seq257 131 6e-28 seq52 127 7e-27 seq273 114 5e-23 seq453 87.8 7e-15 >seq2212 Length=525671 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 28/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 155270 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 155329 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 155330 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 155389 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 155390 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 155449 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 155450 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 155502 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 155503 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 155557 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 155558 CCCT----GGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 155608 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 155609 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 155668 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 155669 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 155718 Score = 154 bits (170), Expect = 5e-35 Identities = 376/560 (67%), Gaps = 50/560 (9%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT----TGTGGGCCCCCTAGACCATCCAGTGCT 111 ||||||||||| ||| | |||||| || || | |||||| |||| |||||| Sbjct 2667 ATTCGGAGTTTCCTTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCT 2608 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||||| || | ||| ||||| || |||| |||||| ||| ||||||||| Sbjct 2607 CTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTA 2548 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || | Sbjct 2547 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACAT 2488 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATC 290 | ||||||||||||||||| | | ||| | | ||||||||||| ||||| |||||| Sbjct 2487 ACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 2428 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA- 349 | | |||||||| || | | | | | |||| || || | | | Sbjct 2427 GATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG----ATTC-CAC---CTCTGGAAAG 2377 Query 350 CGGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 || |||| || | || |||| || | | || | ||||| | | ||| | || Sbjct 2376 CGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCA 2320 Query 409 AAAGGCACGCCGTCA-CCTG-GTAC------CTAA--------------AAGGCACT--- 443 ||||| ||||||| | || || | |||| ||||| || Sbjct 2319 AAAGGTACGCCGTTAGAGTGAGTGCGCTTGACTAAGATAATAGAAAGTCAAGGCTCTAAG 2260 Query 444 -TCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCC 497 || |||| |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 2259 CTCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAA 2200 Query 498 AGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATT 557 |||| |||||||||||||||||||||||||||| |||||||||||| |||| || | Sbjct 2199 TAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACT 2140 Query 558 TAGGCTTAACGGGTGGTCCC 577 |||||||| |||||||||| Sbjct 2139 TAGGCTTAGAGGGTGGTCCC 2120 Score = 154 bits (170), Expect = 5e-35 Identities = 376/560 (67%), Gaps = 50/560 (9%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT----TGTGGGCCCCCTAGACCATCCAGTGCT 111 ||||||||||| ||| | |||||| || || | |||||| |||| |||||| Sbjct 229553 ATTCGGAGTTTCCTTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCT 229612 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||||| || | ||| ||||| || |||| |||||| ||| ||||||||| Sbjct 229613 CTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTA 229672 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || | Sbjct 229673 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACAT 229732 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATC 290 | ||||||||||||||||| | | ||| | | ||||||||||| ||||| |||||| Sbjct 229733 ACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 229792 Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA- 349 | | |||||||| || | | | | | |||| || || | | | Sbjct 229793 GATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG----ATTC-CAC---CTCTGGAAAG 229843 Query 350 CGGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 || |||| || | || |||| || | | || | ||||| | | ||| | || Sbjct 229844 CGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCA 229900 Query 409 AAAGGCACGCCGTCA-CCTG-GTAC------CTAA--------------AAGGCACT--- 443 ||||| ||||||| | || || | |||| ||||| || Sbjct 229901 AAAGGTACGCCGTTAGAGTGAGTGCGCTTGACTAAGATAATAGAAAGTCAAGGCTCTAAG 229960 Query 444 -TCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCC 497 || |||| |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 229961 CTCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAA 230020 Query 498 AGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATT 557 |||| |||||||||||||||||||||||||||| |||||||||||| |||| || | Sbjct 230021 TAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACT 230080 Query 558 TAGGCTTAACGGGTGGTCCC 577 |||||||| |||||||||| Sbjct 230081 TAGGCTTAGAGGGTGGTCCC 230100 >seq257 Length=612112 Score = 131 bits (144), Expect = 6e-28 Identities = 174/240 (73%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT----TGTGGGCCCCCTAGACCATCCAGTGCT 111 ||||||||||| ||| | |||||| || || | |||||| |||| ||| || Sbjct 205503 ATTCGGAGTTTCCTTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTACT 205562 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||||| || | ||| ||||| | |||| |||||| ||| ||||||||| Sbjct 205563 CTACCTCGGGCCATCGACATCATACGCTCTATTGAAATAGATTTCGCGGAAAACCAGCTA 205622 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || | Sbjct 205623 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACAT 205682 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATC 290 | ||||||||||||||||| | | ||| | | ||||||||||| ||||| |||||| Sbjct 205683 ATGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 205742 Score = 100 bits (110), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | |||||| || ||| ||||||| |||| | Sbjct 205919 CTTCGACTGATTGTTCGCATCGAATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 205978 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || |||||||| Sbjct 205979 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACATAGGCTTA 206038 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 206039 GAGGGTGGTCCC 206050 >seq52 Length=858645 Score = 127 bits (140), Expect = 7e-27 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || |||||||| |||||| ||||| ||||||||| ||||||||||||||| Sbjct 669576 GGTTTCATGTTCTATTTCAGTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 669517 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | |||||||||||||| |||||||||||| ||| |||||||| | |||||||| Sbjct 669516 ACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACA 669457 Query 590 CGAAATTTCA 599 || ||| || Sbjct 669456 CGGGATTCCA 669447 >seq273 Length=2571979 Score = 114 bits (126), Expect = 5e-23 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 2561599 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 2561658 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 2561659 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 2561718 Query 257 CTTACCCGCGCTTCAACC 274 | |||| |||||| || Sbjct 2561719 TTCACCCAAGCTTCAGCC 2561736 >seq453 Length=423504 Score = 87.8 bits (96), Expect = 7e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 ||||||| || ||||||||||||||| | |||||||||| ||| |||| ||||||| || Sbjct 22631 ACTTTTCGCCATTCCCTCACGGTACTACTTCGCTATCGGTTACCCAGGATTATTTAGCCT 22572 Query 564 TAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||| ||||||||||||||| || Sbjct 22571 TGCAAGGTGGTCCTTGTTGATTCACACGAAATTCCA 22536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817559794688