Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02]
2,212 sequences; 322,166,964 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq2212 264 4e-68
seq257 131 6e-28
seq52 127 7e-27
seq273 114 5e-23
seq453 87.8 7e-15
>seq2212
Length=525671
Score = 264 bits (292), Expect = 4e-68
Identities = 345/470 (73%), Gaps = 28/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 155270 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 155329
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 155330 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 155389
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 155390 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 155449
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 155450 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 155502
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 155503 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 155557
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
||| ||| | |||| || | ||| || | ||||||| || |||||||||
Sbjct 155558 CCCT----GGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 155608
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 155609 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 155668
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 155669 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 155718
Score = 154 bits (170), Expect = 5e-35
Identities = 376/560 (67%), Gaps = 50/560 (9%)
Strand=Plus/Minus
Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT----TGTGGGCCCCCTAGACCATCCAGTGCT 111
||||||||||| ||| | |||||| || || | |||||| |||| ||||||
Sbjct 2667 ATTCGGAGTTTCCTTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCT 2608
Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171
||||||| || | ||| ||||| || |||| |||||| ||| |||||||||
Sbjct 2607 CTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTA 2548
Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231
| | | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || |
Sbjct 2547 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACAT 2488
Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATC 290
| ||||||||||||||||| | | ||| | | ||||||||||| ||||| ||||||
Sbjct 2487 ACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 2428
Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA- 349
| | |||||||| || | | | | | |||| || || | | |
Sbjct 2427 GATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG----ATTC-CAC---CTCTGGAAAG 2377
Query 350 CGGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408
|| |||| || | || |||| || | | || | ||||| | | ||| | ||
Sbjct 2376 CGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCA 2320
Query 409 AAAGGCACGCCGTCA-CCTG-GTAC------CTAA--------------AAGGCACT--- 443
||||| ||||||| | || || | |||| ||||| ||
Sbjct 2319 AAAGGTACGCCGTTAGAGTGAGTGCGCTTGACTAAGATAATAGAAAGTCAAGGCTCTAAG 2260
Query 444 -TCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCC 497
|| |||| |||| |||||| ||| | | |||||| ||||| |||||||
Sbjct 2259 CTCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAA 2200
Query 498 AGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATT 557
|||| |||||||||||||||||||||||||||| |||||||||||| |||| || |
Sbjct 2199 TAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACT 2140
Query 558 TAGGCTTAACGGGTGGTCCC 577
|||||||| ||||||||||
Sbjct 2139 TAGGCTTAGAGGGTGGTCCC 2120
Score = 154 bits (170), Expect = 5e-35
Identities = 376/560 (67%), Gaps = 50/560 (9%)
Strand=Plus/Plus
Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT----TGTGGGCCCCCTAGACCATCCAGTGCT 111
||||||||||| ||| | |||||| || || | |||||| |||| ||||||
Sbjct 229553 ATTCGGAGTTTCCTTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTGCT 229612
Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171
||||||| || | ||| ||||| || |||| |||||| ||| |||||||||
Sbjct 229613 CTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTA 229672
Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231
| | | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || |
Sbjct 229673 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACAT 229732
Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATC 290
| ||||||||||||||||| | | ||| | | ||||||||||| ||||| ||||||
Sbjct 229733 ACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 229792
Query 291 ACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA- 349
| | |||||||| || | | | | | |||| || || | | |
Sbjct 229793 GATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG----ATTC-CAC---CTCTGGAAAG 229843
Query 350 CGGCTACCCCACACGGGTTAA-CCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408
|| |||| || | || |||| || | | || | ||||| | | ||| | ||
Sbjct 229844 CGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTC---CTCGCTGACCCATCATGCA 229900
Query 409 AAAGGCACGCCGTCA-CCTG-GTAC------CTAA--------------AAGGCACT--- 443
||||| ||||||| | || || | |||| ||||| ||
Sbjct 229901 AAAGGTACGCCGTTAGAGTGAGTGCGCTTGACTAAGATAATAGAAAGTCAAGGCTCTAAG 229960
Query 444 -TCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCC 497
|| |||| |||| |||||| ||| | | |||||| ||||| |||||||
Sbjct 229961 CTCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAA 230020
Query 498 AGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATT 557
|||| |||||||||||||||||||||||||||| |||||||||||| |||| || |
Sbjct 230021 TAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACT 230080
Query 558 TAGGCTTAACGGGTGGTCCC 577
|||||||| ||||||||||
Sbjct 230081 TAGGCTTAGAGGGTGGTCCC 230100
>seq257
Length=612112
Score = 131 bits (144), Expect = 6e-28
Identities = 174/240 (73%), Gaps = 5/240 (2%)
Strand=Plus/Plus
Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCT----TGTGGGCCCCCTAGACCATCCAGTGCT 111
||||||||||| ||| | |||||| || || | |||||| |||| ||| ||
Sbjct 205503 ATTCGGAGTTTCCTTGGGGTTGGTAAGGCGAAATGGGGCCACCCTAGCCCATTGAGTACT 205562
Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171
||||||| || | ||| ||||| | |||| |||||| ||| |||||||||
Sbjct 205563 CTACCTCGGGCCATCGACATCATACGCTCTATTGAAATAGATTTCGCGGAAAACCAGCTA 205622
Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231
| | | ||| ||||||||||||||||| ||||| ||||||||| | ||| | || |
Sbjct 205623 TATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACAT 205682
Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATC 290
| ||||||||||||||||| | | ||| | | ||||||||||| ||||| ||||||
Sbjct 205683 ATGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 205742
Score = 100 bits (110), Expect = 1e-18
Identities = 102/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505
|| |||| |||||| ||| | |||||| || ||| ||||||| |||| |
Sbjct 205919 CTTCGACTGATTGTTCGCATCGAATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 205978
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||
Sbjct 205979 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACATAGGCTTA 206038
Query 566 ACGGGTGGTCCC 577
||||||||||
Sbjct 206039 GAGGGTGGTCCC 206050
>seq52
Length=858645
Score = 127 bits (140), Expect = 7e-27
Identities = 106/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || |||||||| |||||| ||||| ||||||||| |||||||||||||||
Sbjct 669576 GGTTTCATGTTCTATTTCAGTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 669517
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
| |||||||||||||| |||||||||||| ||| |||||||| | ||||||||
Sbjct 669516 ACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACA 669457
Query 590 CGAAATTTCA 599
|| ||| ||
Sbjct 669456 CGGGATTCCA 669447
>seq273
Length=2571979
Score = 114 bits (126), Expect = 5e-23
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 2561599 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 2561658
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 2561659 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 2561718
Query 257 CTTACCCGCGCTTCAACC 274
| |||| |||||| ||
Sbjct 2561719 TTCACCCAAGCTTCAGCC 2561736
>seq453
Length=423504
Score = 87.8 bits (96), Expect = 7e-15
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563
||||||| || ||||||||||||||| | |||||||||| ||| |||| ||||||| ||
Sbjct 22631 ACTTTTCGCCATTCCCTCACGGTACTACTTCGCTATCGGTTACCCAGGATTATTTAGCCT 22572
Query 564 TAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
| |||||||| ||||||||||||||| ||
Sbjct 22571 TGCAAGGTGGTCCTTGTTGATTCACACGAAATTCCA 22536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817559794688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |