Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1969 168 1e-39 seq2212 132 1e-28 seq941 105 1e-20 seq730 77.0 6e-12 >seq1969 Length=1425041 Score = 168 bits (186), Expect = 1e-39 Identities = 134/160 (84%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||| |||| Sbjct 1424651 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC-GTAG 1424593 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 1424592 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 1424533 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | ||| |||||| |||||| ||||||||||| |||||| Sbjct 1424532 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATC 1424493 >seq2212 Length=525671 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 464268 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 464327 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | || || || || |||| ||| | || Sbjct 464328 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGG 464387 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 464388 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 464420 >seq941 Length=178831 Score = 105 bits (116), Expect = 1e-20 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 |||| |||| ||||| ||||| |||||||| ||||||| | ||||| ||| | || Sbjct 106332 TCAGACTTTCGTTCATTGCAGAATATTCCCCACTGATGCCTCCTGAAGGAGACTGAGTCG 106391 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||| ||||| ||||| | ||| ||||||| | ||||| ||| || ||| || Sbjct 106392 TGTCTCAATCCCAGTGTGGTTGATCATTCTCTCAGACAAGCTACTGATTATCATCTTAGT 106451 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||||| ||||||||||| ||||| | || ||||| || Sbjct 106452 AAGCTATTGCCTCACCAACTAGCTAATGAGATGCAAGCCCCTC 106494 >seq730 Length=252822 Score = 77.0 bits (84), Expect = 6e-12 Identities = 106/147 (72%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 || || |||| |||||| | || | |||||||||| ||| |||| |||||| |||||| Sbjct 153655 AAAATTCCCCTTTGCTGCTTTCCATTGGAGTCTGGGTCGTATCTCGGTCCCAGTGTGGCT 153596 Query 94 GTTCAACC-----TCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACC 148 | ||| || |||| | | ||||| ||| || || || |||||| |||||| Sbjct 153595 GATCATCCGATCCTCTCGGACTAGCTACA-ATCTTCACTTTAGTAAGCTATTGCCTCACC 153537 Query 149 AACTACCTAATCGGCCGCGAGCCCATC 175 ||||| |||||| | | | ||||| || Sbjct 153536 AACTATCTAATCAGACCCAAGCCCCTC 153510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998377915392