Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2212 268 1e-69 seq528 210 3e-52 seq257 205 1e-50 seq1942 201 2e-49 seq321 93.3 7e-17 >seq2212 Length=525671 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 153327 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 153386 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 153387 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 153446 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 153447 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 153506 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 153507 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 153566 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 153567 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 153599 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| Sbjct 4655 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAG 4596 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 4595 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 4536 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 4535 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 4476 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 4475 ACCACTTAAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 4416 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 4415 AGTCGACATCG 4405 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| Sbjct 227565 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAG 227624 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 227625 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 227684 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 227685 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 227744 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 227745 ACCACTTAAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 227804 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 227805 AGTCGACATCG 227815 >seq528 Length=404557 Score = 210 bits (232), Expect = 3e-52 Identities = 164/196 (84%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| |||||||||| |||| ||||||||||||||||| | ||| || |||||||| Sbjct 135843 AACTGGTACACCAGAGGTACGTCCTTCCCGGTCCTCTCGTACAAGGGAAAGTTCCTCTCA 135902 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 || || |||||||| |||||| ||| ||||||||||| || |||||||||| |||| Sbjct 135903 AAGCTCTAACGCCCACACCGGATATGGAGCGAACTGTCTCATGATGTTCTGAACCTAGCT 135962 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 | ||| || |||||||||||||||| ||| |||||||| || |||| |||||||||| | Sbjct 135963 CACGTACCGCTTTAATGGGCGAACAACCCTACCCTTGGAACATACTACAGCCCCAGGTGG 136022 Query 260 AGACGAGCCGACATCG 275 || |||||||||||| Sbjct 136023 CGAAGAGCCGACATCG 136038 >seq257 Length=612112 Score = 205 bits (226), Expect = 1e-50 Identities = 162/193 (84%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143 ||| ||| |||||| ||||| ||||||||||||||||||| ||| || ||||||||| Sbjct 204146 GGTACACTAGAGGTGTGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGC 204087 Query 144 TCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG 203 | |||||||| |||||| |||||| ||||||| ||||||||||||||||||| || Sbjct 204086 ACTAACGCCCACACCGGATATGGACCGGGCTGTCTCAGGACGTTCTGAACCCAGCTCACG 204027 Query 204 TGCCTCTTTAATGGGCG-AACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGA 262 | || |||||||||||| ||||||||||||||||| || |||| |||||||||| | || Sbjct 204026 TACCGCTTTAATGGGCGAAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGA 203967 Query 263 CGAGCCGACATCG 275 |||||||||||| Sbjct 203966 AGAGCCGACATCG 203954 >seq1942 Length=1573146 Score = 201 bits (222), Expect = 2e-49 Identities = 162/196 (83%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| |||||||||| |||| ||||||||||||||||| | || || |||||||| Sbjct 1176419 AACTGGTACACCAGAGGTAAGTCCTTCCCGGTCCTCTCGTACAAGAGAAAGTTCCTCTCA 1176478 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 | || |||||||| |||||| ||| ||||||||||| || |||||||||| |||| Sbjct 1176479 ATGCTCTAACGCCCACACCGGATATGGAGCGAACTGTCTCATGATGTTCTGAACCTAGCT 1176538 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 | ||| || |||||||||||||||| ||| |||||||| || |||| |||||||||| | Sbjct 1176539 CACGTACCGCTTTAATGGGCGAACAACCCTACCCTTGGAACATACTACAGCCCCAGGTGG 1176598 Query 260 AGACGAGCCGACATCG 275 || |||||||||||| Sbjct 1176599 CGAAGAGCCGACATCG 1176614 >seq321 Length=545415 Score = 93.3 bits (102), Expect = 7e-17 Identities = 118/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 114 TCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAAC 173 |||||| || | | || ||||||||| || || |||||| ||||| | ||||||| Sbjct 529096 TCTCGTGATAGGAAAAGGTCCTCTCAATGCTCTAACACCCACGTTGGATATGAACCGAAC 529037 Query 174 TGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCC 233 |||||| | ||||| ||||| || ||| | || ||||| ||||| | | ||| | Sbjct 529036 TGTCTCACCACGTTTTGAACTCAACTCATGCACCGCTTTAGCGGGCGCA---CTCAAATC 528980 Query 234 TTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| || |||| || ||||| | | || |||||||||||| Sbjct 528979 TTGGAACATACTACAACCCCAAGTGGCGAAGAGCCGACATCG 528938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780783268432