Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02]
2,212 sequences; 322,166,964 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq1969 210 5e-52
seq2212 165 2e-38
seq941 113 1e-22
seq1967 77.0 8e-12
seq730 77.0 8e-12
>seq1969
Length=1425041
Score = 210 bits (232), Expect = 5e-52
Identities = 162/191 (85%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 1424682 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 1424623
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || ||||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 1424622 GCGGAAAATTCCCCACTGCTGCCTCC-GTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1424564
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 1424563 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 1424504
Query 185 ACTAGCTAATC 195
|||||||||||
Sbjct 1424503 ACTAGCTAATC 1424493
>seq2212
Length=525671
Score = 165 bits (182), Expect = 2e-38
Identities = 153/193 (79%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 464228 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 464287
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 464288 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 464347
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| || ||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 464348 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 464407
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 464408 CCAACTACCTAAT 464420
>seq941
Length=178831
Score = 113 bits (124), Expect = 1e-22
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107
|||| ||| || ||||| |||||||||||||| ||||||| | ||||| ||| ||
Sbjct 106332 TCAGACTTTCGTTCATTGCAGAATATTCCCCACTGATGCCTCCTGAAGGAGACTGAGTCG 106391
Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167
||||||| | ||||||||| || |||| ||||||||| ||||| ||| || || ||
Sbjct 106392 TGTCTCAATCCCAGTGTGGTTGATCATTCTCTCAGACAAGCTACTGATTATCATCTTAGT 106451
Query 168 GGGCCATTACCCCGCCAACTAGCTAAT 194
|| ||| || | |||||||||||||
Sbjct 106452 AAGCTATTGCCTCACCAACTAGCTAAT 106478
>seq1967
Length=32882
Score = 77.0 bits (84), Expect = 8e-12
Identities = 86/114 (75%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 12 CCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAT 71
|||| ||||||| | | |||||| ||| ||| | |||||||| ||| | || | ||
Sbjct 2847 CCCGTGGGCCTTCCACCTCCACGCGTCATTGCTACGTCAGGCTTTCGCGTAGTGCGGAAA 2906
Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125
| |||| |||| ||| | ||||| || | ||| ||||||||||| ||||||||
Sbjct 2907 ACTCCCAACTGTTGCGTACCGTATGATT-TGGGTCGTGTCTCAGTCCCAGTGTG 2959
>seq730
Length=252822
Score = 77.0 bits (84), Expect = 8e-12
Identities = 97/132 (73%), Gaps = 6/132 (5%)
Strand=Plus/Minus
Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128
|| ||||||| |||||| | || | ||||||||| ||| |||| || |||||||||||
Sbjct 153655 AAAATTCCCCTTTGCTGCTTTCCATTGGAGTCTGGGTCGTATCTCGGTCCCAGTGTGGCT 153596
Query 129 GGTC-----ATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
| || |||||||| ||| ||||| ||| || | | || || ||| || | ||
Sbjct 153595 GATCATCCGATCCTCTCGGACTAGCTA-CAATCTTCACTTTAGTAAGCTATTGCCTCACC 153537
Query 184 AACTAGCTAATC 195
||||| ||||||
Sbjct 153536 AACTATCTAATC 153525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222372960512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |