Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1969 210 5e-52 seq2212 165 2e-38 seq941 113 1e-22 seq1967 77.0 8e-12 seq730 77.0 8e-12 >seq1969 Length=1425041 Score = 210 bits (232), Expect = 5e-52 Identities = 162/191 (85%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 1424682 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 1424623 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| Sbjct 1424622 GCGGAAAATTCCCCACTGCTGCCTCC-GTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1424564 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 1424563 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 1424504 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 1424503 ACTAGCTAATC 1424493 >seq2212 Length=525671 Score = 165 bits (182), Expect = 2e-38 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 464228 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 464287 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 464288 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 464347 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 464348 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 464407 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 464408 CCAACTACCTAAT 464420 >seq941 Length=178831 Score = 113 bits (124), Expect = 1e-22 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||| ||| || ||||| |||||||||||||| ||||||| | ||||| ||| || Sbjct 106332 TCAGACTTTCGTTCATTGCAGAATATTCCCCACTGATGCCTCCTGAAGGAGACTGAGTCG 106391 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||||| | ||||||||| || |||| ||||||||| ||||| ||| || || || Sbjct 106392 TGTCTCAATCCCAGTGTGGTTGATCATTCTCTCAGACAAGCTACTGATTATCATCTTAGT 106451 Query 168 GGGCCATTACCCCGCCAACTAGCTAAT 194 || ||| || | ||||||||||||| Sbjct 106452 AAGCTATTGCCTCACCAACTAGCTAAT 106478 >seq1967 Length=32882 Score = 77.0 bits (84), Expect = 8e-12 Identities = 86/114 (75%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 12 CCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAT 71 |||| ||||||| | | |||||| ||| ||| | |||||||| ||| | || | || Sbjct 2847 CCCGTGGGCCTTCCACCTCCACGCGTCATTGCTACGTCAGGCTTTCGCGTAGTGCGGAAA 2906 Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 125 | |||| |||| ||| | ||||| || | ||| ||||||||||| |||||||| Sbjct 2907 ACTCCCAACTGTTGCGTACCGTATGATT-TGGGTCGTGTCTCAGTCCCAGTGTG 2959 >seq730 Length=252822 Score = 77.0 bits (84), Expect = 8e-12 Identities = 97/132 (73%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 || ||||||| |||||| | || | ||||||||| ||| |||| || ||||||||||| Sbjct 153655 AAAATTCCCCTTTGCTGCTTTCCATTGGAGTCTGGGTCGTATCTCGGTCCCAGTGTGGCT 153596 Query 129 GGTC-----ATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 | || |||||||| ||| ||||| ||| || | | || || ||| || | || Sbjct 153595 GATCATCCGATCCTCTCGGACTAGCTA-CAATCTTCACTTTAGTAAGCTATTGCCTCACC 153537 Query 184 AACTAGCTAATC 195 ||||| |||||| Sbjct 153536 AACTATCTAATC 153525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222372960512