Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1969 309 9e-82 seq2212 260 4e-67 seq941 111 5e-22 seq1967 78.8 3e-12 >seq1969 Length=1425041 Score = 309 bits (342), Expect = 9e-82 Identities = 274/339 (81%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||| || |||||||||||||| |||||||||| | | || Sbjct 1424490 TCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGA 1424549 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||| ||| |||||||||||| ||| |||||||| |||||||||||| Sbjct 1424550 GAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTAC-GGAGGCAGCAGT 1424608 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| || | |||||||| ||||||||| | ||||| |||||||| | |||||| Sbjct 1424609 GGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGC 1424668 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGC 401 | |||||||| || ||| | | | ||||| |||||||||| || ||| |||| Sbjct 1424669 CCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAATAAGC 1424728 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||| ||||||||||||||||||| || ||| || ||||||||||||||| Sbjct 1424729 ATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAAT 1424788 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | |||||||||| || |||||||| || ||||||| Sbjct 1424789 GA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 1424826 >seq2212 Length=525671 Score = 260 bits (288), Expect = 4e-67 Identities = 256/327 (78%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 464420 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 464361 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 464360 ACGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 464301 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 464300 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 464241 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 464240 GCCGCTTGTAAAGCTCTTTCATCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCC 464181 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 464180 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 464121 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 464120 CT-GGGCGTAAAGGGCACGTAGGCGGT 464095 Score = 114 bits (126), Expect = 4e-23 Identities = 100/123 (81%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| ||||||||| ||||||||||||||||||| || Sbjct 119297 AATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACA 119238 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||||||||||||||| | | |||||||||| || |||||||| || |||| Sbjct 119237 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAA 119179 Query 498 GTC 500 ||| Sbjct 119178 GTC 119176 >seq941 Length=178831 Score = 111 bits (122), Expect = 5e-22 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || ||| |||||||||||||| ||| || |||||| ||| || ||||||||| | Sbjct 106485 GCATCTCATTAGCTAGTTGGTGAGGCAATAGCTTACTAAGATGATAATCAGTAGCTTGTC 106426 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| ||||| ||| | ||||||||| || ||||| | ||||||| | Sbjct 106425 TGAGAGAATGATCAACCACACTGGGATTGAGACACGACTCAGTCTCCTTCAGGAGGCATC 106366 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 ||||||||||||| ||||| | |||| |||| Sbjct 106365 AGTGGGGAATATTCTGCAATGAACGAAAGTCTGA 106332 >seq1967 Length=32882 Score = 78.8 bits (86), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 237 CACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCA 296 |||| ||| ||||||||||| ||||| || ||||| | ||| |||| |||| | || | Sbjct 2959 CACACTGGGACTGAGACACGACCCAAA-TCATACGGTACGCAACAGTTGGGAGTTTTCCG 2901 Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAA 356 || | || ||||||||| | ||||| | |||||| | ||||||| |||| ||| | Sbjct 2900 CACTACGCGAAAGCCTGACGTAGCAATGACGCGTGGAGGTGGAAGGCCCACGGGACGTTA 2841 Query 357 AGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410 | ||| | | | ||||| ||||| |||| || ||| |||| || |||| Sbjct 2840 ACTTCTTTTCCCGGAGAAGAGGCAATGATGGTATCTG-GGAATAAGCATCGACTAA 2786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497566873088