Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02]
2,212 sequences; 322,166,964 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq1969 309 9e-82
seq2212 260 4e-67
seq941 111 5e-22
seq1967 78.8 3e-12
>seq1969
Length=1425041
Score = 309 bits (342), Expect = 9e-82
Identities = 274/339 (81%), Gaps = 4/339 (1%)
Strand=Plus/Plus
Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223
|||||||||||||||||| ||| || |||||||||||||| |||||||||| | | ||
Sbjct 1424490 TCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGA 1424549
Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283
|||| ||||| |||||| ||| |||||||||||| ||| |||||||| ||||||||||||
Sbjct 1424550 GAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTAC-GGAGGCAGCAGT 1424608
Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343
||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||||||
Sbjct 1424609 GGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGC 1424668
Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGC 401
| |||||||| || ||| | | | ||||| |||||||||| || ||| ||||
Sbjct 1424669 CCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAATAAGC 1424728
Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461
||||||||| ||||||||||||||||||| || ||| || |||||||||||||||
Sbjct 1424729 ATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAAT 1424788
Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| | |||||||||| || |||||||| || |||||||
Sbjct 1424789 GA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 1424826
>seq2212
Length=525671
Score = 260 bits (288), Expect = 4e-67
Identities = 256/327 (78%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 464420 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 464361
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
|||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 464360 ACGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 464301
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 464300 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 464241
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| ||| ||||| |||||||
Sbjct 464240 GCCGCTTGTAAAGCTCTTTCATCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCC 464181
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 464180 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 464121
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| |||||||||||| |||||| |||
Sbjct 464120 CT-GGGCGTAAAGGGCACGTAGGCGGT 464095
Score = 114 bits (126), Expect = 4e-23
Identities = 100/123 (81%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437
|||||||||| || ||| |||| ||||||||| ||||||||||||||||||| ||
Sbjct 119297 AATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACA 119238
Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497
||| || ||||||||||||||| | | |||||||||| || |||||||| || ||||
Sbjct 119237 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAA 119179
Query 498 GTC 500
|||
Sbjct 119178 GTC 119176
>seq941
Length=178831
Score = 111 bits (122), Expect = 5e-22
Identities = 117/154 (76%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|| ||| |||||||||||||| ||| || |||||| ||| || ||||||||| |
Sbjct 106485 GCATCTCATTAGCTAGTTGGTGAGGCAATAGCTTACTAAGATGATAATCAGTAGCTTGTC 106426
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
|||||| ||||| ||||| ||| | ||||||||| || ||||| | ||||||| |
Sbjct 106425 TGAGAGAATGATCAACCACACTGGGATTGAGACACGACTCAGTCTCCTTCAGGAGGCATC 106366
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314
||||||||||||| ||||| | |||| ||||
Sbjct 106365 AGTGGGGAATATTCTGCAATGAACGAAAGTCTGA 106332
>seq1967
Length=32882
Score = 78.8 bits (86), Expect = 3e-12
Identities = 125/176 (71%), Gaps = 4/176 (2%)
Strand=Plus/Minus
Query 237 CACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCA 296
|||| ||| ||||||||||| ||||| || ||||| | ||| |||| |||| | || |
Sbjct 2959 CACACTGGGACTGAGACACGACCCAAA-TCATACGGTACGCAACAGTTGGGAGTTTTCCG 2901
Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAA 356
|| | || ||||||||| | ||||| | |||||| | ||||||| |||| ||| |
Sbjct 2900 CACTACGCGAAAGCCTGACGTAGCAATGACGCGTGGAGGTGGAAGGCCCACGGGACGTTA 2841
Query 357 AGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410
| ||| | | | ||||| ||||| |||| || ||| |||| || ||||
Sbjct 2840 ACTTCTTTTCCCGGAGAAGAGGCAATGATGGTATCTG-GGAATAAGCATCGACTAA 2786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497566873088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |