Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2212 226 7e-57 seq1969 226 7e-57 seq528 197 3e-48 seq1942 188 2e-45 seq2047 86.0 2e-14 >seq2212 Length=525671 Score = 226 bits (250), Expect = 7e-57 Identities = 256/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 464197 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 464138 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 464137 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 464078 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 464077 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 464024 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 464023 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 463964 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 463963 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 463904 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 463903 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 463864 Score = 145 bits (160), Expect = 2e-32 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| || Sbjct 6796 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 6737 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 |||||| | | |||||||||||| ||||| | |||| || || |||||||| Sbjct 6736 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAACTAGGGGGGCGAATGGGATTAGA 6677 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTC 366 ||||| ||||||| ||||||||||||| |||||||| | | | ||| || | | Sbjct 6676 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTG 6618 Query 367 CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 6617 CAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 6576 Score = 145 bits (160), Expect = 2e-32 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| || Sbjct 225424 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 225483 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 |||||| | | |||||||||||| ||||| | |||| || || |||||||| Sbjct 225484 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAACTAGGGGGGCGAATGGGATTAGA 225543 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTC 366 ||||| ||||||| ||||||||||||| |||||||| | | | ||| || | | Sbjct 225544 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTG 225602 Query 367 CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 225603 CAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 225644 Score = 120 bits (132), Expect = 7e-25 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 119285 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 119226 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 119225 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 119166 Query 125 GGCTATGGCTCAACCC 140 | | |||||||||| Sbjct 119165 TCCCAGGGCTCAACCC 119150 >seq1969 Length=1425041 Score = 226 bits (250), Expect = 7e-57 Identities = 245/325 (75%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 1424717 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 1424776 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 1424777 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 1424836 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 1424837 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 1424896 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | || |||||||||||||||||| || | | |||||||| |||||| Sbjct 1424897 GAGGGAATTTCCGGTAGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 1424956 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 1424957 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 1425016 Query 305 AGATACCCTGGTAGTCCACGCCGTA 329 |||||||| ||||||| |||||| Sbjct 1425017 AGATACCCCAGTAGTCCTAGCCGTA 1425041 >seq528 Length=404557 Score = 197 bits (218), Expect = 3e-48 Identities = 270/373 (72%), Gaps = 3/373 (1%) Strand=Plus/Plus Query 37 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96 |||| ||||||| | ||| || || |||||||||||| | |||||||| | || Sbjct 134705 CAGCTGCGGTAAGATAGAGGATGCAAGTGTTATCCGGAATGATTGGGCGTACAACGTCTT 134764 Query 97 TAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA 156 ||||||| || ||||||| | | ||| | | |||||||||| || || | || Sbjct 134765 TAGGTGGCTTTTTAAGTCCGTCATCAAATCCCAGGGCTCAACCCTGGACAGGCGGTAAAA 134824 Query 157 ACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGT 216 ||| | | | |||| ||| ||||| | |||||| | ||| |||||||||||||| Sbjct 134825 ACTACCATGTTGGAGTACAGTAGGGGTAGAGGGAATTTATGGTGGAGCGGTGAAATGCGC 134884 Query 217 AGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGG 276 ||| ||| | |||||||||| |||||| || ||||||| | | |||||||||||| Sbjct 134885 AGAGATTGGAAGGAACACCAACGGCGAAAGCACTTTGCTGGGCCGAGACTGACACTGAGA 134944 Query 277 CTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||| ||||||| || ||||||||||||| ||||||| ||||||||||||| Sbjct 134945 GACGAAAGCAAGGGGAGCGAATGGGATTAGATACCC-AGTAGTCCTAGCCGTAAACGATG 135003 Query 337 AATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTC 395 |||||||| | | ||| || | | | ||| | ||| ||||| ||||||| | Sbjct 135004 GATACTAGG-CACTGTGCGTATCGACCCGTGCAGTGTTGTAGCTAACGCGTTAAGTATCC 135062 Query 396 CACCTGGGGAGTA 408 | ||| ||||||| Sbjct 135063 CGCCTTGGGAGTA 135075 >seq1942 Length=1573146 Score = 188 bits (208), Expect = 2e-45 Identities = 266/369 (72%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 42 GCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGT 101 ||||||| | | ||| || || |||||||||||| | |||||||| | || |||||| Sbjct 1175287 GCGGTAAGATGGAGGATGCAAGTGTTATCCGGAATGATTGGGCGTACAACGTCTGTAGGT 1175346 Query 102 GGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGC 161 || || ||||||| | | ||| | | |||||||||| || || | ||||| | Sbjct 1175347 GGCTTTTTAAGTCCGTCATCAAATCCCAGGGCTCAACCCTGGACAGGCGGTAAAAACTAC 1175406 Query 162 AGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATA 221 ||| |||| || ||||| | |||||| | ||| |||||||||||| | ||| | Sbjct 1175407 CAAGCTGGAGTATAGTAGGGGTAGAGGGAATTTATGGTGGAGCGGTGAAATGTGCAGAGA 1175466 Query 222 TTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGA 281 || | | |||||||| |||||| || ||||||| | | |||||||||||| ||| Sbjct 1175467 TTGGAAAGAACACCAACGGCGAAAGCACTTTGCTGGGCCGAGACTGACACTGAGAGACGA 1175526 Query 282 AAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATAC 341 ||||| ||||||| || ||||||||||||| ||||||| ||| ||||||||| |||| Sbjct 1175527 AAGCGAGGGGAGCGAATGGGATTAGATACCC-AGTAGTCCTAGCCATAAACGATGGATAC 1175585 Query 342 TAGGTGTCGGGGCGCAT--AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACC 399 || | | | ||| || | || | | ||| | ||| ||| | ||||||| || || Sbjct 1175586 TAAG-CACTGTGCGTATCGACCTG-TGCAGTGTTGTAGCTAACACGTTAAGTATCCCGCC 1175643 Query 400 TGGGGAGTA 408 | ||||||| Sbjct 1175644 TTGGGAGTA 1175652 >seq2047 Length=1241070 Score = 86.0 bits (94), Expect = 2e-14 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| | ||||| ||||||| || ||||||||||||| ||||| Sbjct 821782 ACTGACACTGAGAGACTAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAATAGTCTTA 821841 Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAAC 382 ||||||||||||| |||||| | | | | ||| || | | | ||| | ||| ||| Sbjct 821842 GCCGTAAACGATGGATACTATGCG-CTGTGCGTATCGACCCGTGCAGTGTTGTAGCTAAC 821900 Query 383 GCAATAAGTATTCCACCTGGGGAGTA 408 || ||||||| || ||||||||||| Sbjct 821901 GCGTTAAGTATCCCGCCTGGGGAGTA 821926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203173385216