Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2212 183 1e-43 seq528 120 1e-24 seq2143 87.8 6e-15 >seq2212 Length=525671 Score = 183 bits (202), Expect = 1e-43 Identities = 292/415 (70%), Gaps = 23/415 (6%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 4199 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 4141 Query 136 GGCACTGTCCC----CAACCCAGATCATGGG--CCAAGGTTAGATATCCACTACGGTCAG 189 ||| |||||| | ||| || || || | |||||| |||| | || Sbjct 4140 CGCAGTGTCCCGCCTCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 4081 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||||| Sbjct 4080 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 4036 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 |||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 4035 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 3976 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 3975 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 3916 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 3915 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 3856 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||||||| |||| |||||| ||||||||||| |||| ||| ||| Sbjct 3855 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATT 3801 Score = 183 bits (202), Expect = 1e-43 Identities = 390/570 (68%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 153734 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 153793 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 153794 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 153852 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 153853 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 153912 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 153913 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--T 153969 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | || ||||||| || | || || || | || ||||| ||| | | ||| Sbjct 153970 CTGCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAACCCAATCCCAGGGAACAGTC 154027 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 154028 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 154087 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 154088 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 154146 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 154147 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 154206 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 154207 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 154260 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 154261 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 154290 Score = 183 bits (202), Expect = 1e-43 Identities = 292/415 (70%), Gaps = 23/415 (6%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 228021 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 228079 Query 136 GGCACTGTCCC----CAACCCAGATCATGGG--CCAAGGTTAGATATCCACTACGGTCAG 189 ||| |||||| | ||| || || || | |||||| |||| | || Sbjct 228080 CGCAGTGTCCCGCCTCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 228139 Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249 |||||| ||||| | | || | | ||| | || | |||||||| Sbjct 228140 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 228184 Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308 |||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 228185 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 228244 Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 228245 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 228304 Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428 |||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||| Sbjct 228305 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 228364 Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||||||||| |||| |||||| ||||||||||| |||| ||| ||| Sbjct 228365 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATT 228419 >seq528 Length=404557 Score = 120 bits (132), Expect = 1e-24 Identities = 107/130 (82%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 133698 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 133640 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||||||||| | Sbjct 133639 GAACTTACCCGACAAGG-ATTTCACTACCTTTGGACCGTTATAGTTACGACCGCCGTTCA 133581 Query 470 CTGGGGCTTC 479 | ||||| || Sbjct 133580 CCGGGGCATC 133571 >seq2143 Length=1161279 Score = 87.8 bits (96), Expect = 6e-15 Identities = 143/204 (70%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 964702 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 964761 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 964762 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 964820 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 964821 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 964880 Query 178 CACTACGGTCAGAGTGGTATTTCA 201 | | ||||||||||| ||| Sbjct 964881 TAGCTCTTCCAGAGTGGTATCTCA 964904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702362342912