Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02]
2,212 sequences; 322,166,964 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq2212 183 1e-43
seq528 120 1e-24
seq2143 87.8 6e-15
>seq2212
Length=525671
Score = 183 bits (202), Expect = 1e-43
Identities = 292/415 (70%), Gaps = 23/415 (6%)
Strand=Plus/Minus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 4199 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 4141
Query 136 GGCACTGTCCC----CAACCCAGATCATGGG--CCAAGGTTAGATATCCACTACGGTCAG 189
||| |||||| | ||| || || || | |||||| |||| | ||
Sbjct 4140 CGCAGTGTCCCGCCTCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 4081
Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249
|||||| ||||| | | || | | ||| | || | ||||||||
Sbjct 4080 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 4036
Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308
|||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 4035 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 3976
Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368
|||| |||| | | ||||||| || | | ||||||||||||| | ||
Sbjct 3975 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 3916
Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428
|||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 3915 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 3856
Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
|||||||||||||||| |||| |||||| ||||||||||| |||| ||| |||
Sbjct 3855 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATT 3801
Score = 183 bits (202), Expect = 1e-43
Identities = 390/570 (68%), Gaps = 23/570 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 153734 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 153793
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 153794 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 153852
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 153853 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 153912
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234
| | ||||||||||| ||| | | ||| | | || || | |||| |
Sbjct 153913 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--T 153969
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | || ||||||| || | || || || | || ||||| ||| | | |||
Sbjct 153970 CTGCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAACCCAATCCCAGGGAACAGTC 154027
Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||| | | |||||||| |||| | || | | ||||||| || | | |
Sbjct 154028 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 154087
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||
Sbjct 154088 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 154146
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 154147 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 154206
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 154207 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 154260
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 154261 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 154290
Score = 183 bits (202), Expect = 1e-43
Identities = 292/415 (70%), Gaps = 23/415 (6%)
Strand=Plus/Plus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 228021 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 228079
Query 136 GGCACTGTCCC----CAACCCAGATCATGGG--CCAAGGTTAGATATCCACTACGGTCAG 189
||| |||||| | ||| || || || | |||||| |||| | ||
Sbjct 228080 CGCAGTGTCCCGCCTCCCCCCGAATGATCGGTGCGGCGGTTAGGCATCCTTAGACGAAAG 228139
Query 190 AGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCT 249
|||||| ||||| | | || | | ||| | || | ||||||||
Sbjct 228140 AGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCT 228184
Query 250 ATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTT 308
|||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 228185 ATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTT 228244
Query 309 TTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGG 368
|||| |||| | | ||||||| || | | ||||||||||||| | ||
Sbjct 228245 ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT 228304
Query 369 TTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 428
|||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 228305 CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 228364
Query 429 TTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
|||||||||||||||| |||| |||||| ||||||||||| |||| ||| |||
Sbjct 228365 TTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATT 228419
>seq528
Length=404557
Score = 120 bits (132), Expect = 1e-24
Identities = 107/130 (82%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409
||||||||| |||| | ||||||| | || |||||||||| ||||||| |||||
Sbjct 133698 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 133640
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||||||||| |
Sbjct 133639 GAACTTACCCGACAAGG-ATTTCACTACCTTTGGACCGTTATAGTTACGACCGCCGTTCA 133581
Query 470 CTGGGGCTTC 479
| ||||| ||
Sbjct 133580 CCGGGGCATC 133571
>seq2143
Length=1161279
Score = 87.8 bits (96), Expect = 6e-15
Identities = 143/204 (70%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 964702 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 964761
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | | |||||||
Sbjct 964762 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 964820
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 964821 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 964880
Query 178 CACTACGGTCAGAGTGGTATTTCA 201
| | ||||||||||| |||
Sbjct 964881 TAGCTCTTCCAGAGTGGTATCTCA 964904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702362342912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |