Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq87042 113 6e-23 seq123288 98.7 1e-18 seq232047 77.0 4e-12 seq53016 77.0 4e-12 seq3532 77.0 4e-12 seq105136 75.2 2e-11 seq190887 73.4 5e-11 seq118271 73.4 5e-11 >seq87042 Length=1486 Score = 113 bits (124), Expect = 6e-23 Identities = 93/110 (85%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 703 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 762 Query 201 CGAACGCCT-TA-GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||||| || ||||||||||||| |||||||||||||||| |||| Sbjct 763 CG--CGCCTCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 810 >seq123288 Length=6451 Score = 98.7 bits (108), Expect = 1e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| || |||||||||| ||||||| | |||| | Sbjct 4346 GGCACCCCTTCTCCCGAAGTTACGAGGTTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 4287 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | || ||| ||||||||||||| |||||| ||||||||| Sbjct 4286 TGCACCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTT 4245 >seq232047 Length=715 Score = 77.0 bits (84), Expect = 4e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 57 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 103 >seq53016 Length=9219 Score = 77.0 bits (84), Expect = 4e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 |||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 3234 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 3188 >seq3532 Length=3298 Score = 77.0 bits (84), Expect = 4e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| | |||||| | ||||| | || ||| |||| Sbjct 2511 CCTTCCGGCACTGGGCAGGCGTCAGCTCCCATACATGGTCTTACGAT-TTGGCAAAGACC 2453 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 |||||||||||||||||||||| Sbjct 2452 TGTGTTTTTAGTAAACAGTCGC 2431 >seq105136 Length=2396 Score = 75.2 bits (82), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||| | ||||||| || || |||||||| | ||||||| | |||| | | Sbjct 1108 GCACCCCTTCTTCTGAAGTTATGGAGCTATTTTGCCAAGTTCCTTAGAGAGAGTTGTCTC 1167 Query 202 GAACG-CCTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| || ||| |||||||||||| |||||| ||||| ||| |||| Sbjct 1168 --ACGCCCCTAGATATTCTCTACCTACCCACCTATGTCGATTTCGGGTA 1214 >seq190887 Length=947 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||| Sbjct 393 CCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCTGAGACT 451 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| ||||||||| || Sbjct 452 TGTGTTTTTGGTAAACAGTTGC 473 >seq118271 Length=2743 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 2641 CCTTCCGGCACTGGGCAGGCGTCAACCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 2583 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 2582 TGTGTTTTTGGTAAACAGTCGC 2561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692556795273