Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq238871 129 1e-27 seq238870 129 1e-27 seq45384 118 3e-24 seq105331 91.5 4e-16 seq190887 78.8 2e-12 seq45354 78.8 2e-12 seq31885 78.8 2e-12 seq3532 78.8 2e-12 seq118271 77.0 8e-12 seq87042 77.0 8e-12 seq57836 73.4 1e-10 >seq238871 Length=1761 Score = 129 bits (142), Expect = 1e-27 Identities = 166/229 (72%), Gaps = 20/229 (9%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||||| ||| Sbjct 861 ATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTTGGA 802 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC--------------- 171 |||| | ||||||||||||||| || ||||||| || ||| | Sbjct 801 TCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATTCAGAACGTAACTCAAAATTTT 742 Query 172 TTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCAC-CGGGCAGGCGTCACACCCTAT 230 ||| |||| || ||| | |||||||| |||| ||||||||||| | |||| Sbjct 741 TTCTTTTTAGTGAATCCCTCCTCTTAACCTTGGAGCACTGGGGCAGGCGTCGCCCCCT-- 684 Query 231 ACGTCCA-CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | | ||| || || ||| || ||||||||||| | ||||||||| Sbjct 683 -CCTATAGCTTGCGCCTTAGCATAGAGCTGTGTTTTTGAGAAACAGTCG 636 >seq238870 Length=2307 Score = 129 bits (142), Expect = 1e-27 Identities = 166/229 (72%), Gaps = 20/229 (9%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||||| ||| Sbjct 2292 ATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTTGGA 2233 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC--------------- 171 |||| | ||||||||||||||| || ||||||| || ||| | Sbjct 2232 TCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATTCAGAACGTAACTCAAAATTTT 2173 Query 172 TTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCAC-CGGGCAGGCGTCACACCCTAT 230 ||| |||| || ||| | |||||||| |||| ||||||||||| | |||| Sbjct 2172 TTCTTTTTAGTGAATCCCTCCTCTTAACCTTGGAGCACTGGGGCAGGCGTCGCCCCCT-- 2115 Query 231 ACGTCCA-CTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | | ||| || || ||| || ||||||||||| | ||||||||| Sbjct 2114 -CCTATAGCTTGCGCCTTAGCATAGAGCTGTGTTTTTGAGAAACAGTCG 2067 >seq45384 Length=1116 Score = 118 bits (130), Expect = 3e-24 Identities = 156/215 (73%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 80 TCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTAC 139 ||| ||||||| ||||| ||||||||||||||| ||||||||||| |||| |||| Sbjct 842 TCGGGCAGGTCACTACTTATGCGACAAGGAATTTCGATACCTTAGGACAGTTAGAGTTAT 901 Query 140 GGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATT--A 197 ||||||||||||||||||||| || | ||||| |||| | | || Sbjct 902 TGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT--------ATAACACTTTTCCTTCCG 953 Query 198 ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGC 257 ||||| | | ||||| | ||||||| |||||| || || | || ||||||| | Sbjct 954 ACCTTTCAACGGTGGGCAAGTGTCACACTCTATACATCGTGTTACCACTTAGCAGAGTCC 1013 Query 258 TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTAT 292 ||||||||||||||| |||| | | |||||||| Sbjct 1014 TGTGTTTTTAATAAATAGTCACTAC-CCCTGGTAT 1047 >seq105331 Length=6188 Score = 91.5 bits (100), Expect = 4e-16 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | ||||||||||| || || ||||||| ||| || |||| | || Sbjct 268 TACTCCGCATCTTCACAAACATGTCTATTTCACA-AGTTTCTCTCCGAGATGGTACCTAG 210 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| || |||||||||||||||||||| ||||||||||||| ||| |||||| Sbjct 209 ATCGTTACACCTTTCGTGCAGGTCGGAACTTATATGACAAGGAATTTCACTAATTTAGGA 150 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTC 161 | ||||| |||| | || || || | |||||| Sbjct 149 CTGTTATAGTTATGATTGCTATTCACTGTGGCTTC 115 >seq190887 Length=947 Score = 78.8 bits (86), Expect = 2e-12 Identities = 113/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Plus Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 ||||| | ||||||||| ||||| ||||||||||| ||| ||| | | | | || Sbjct 317 CCGTTCTAGTTACGGCCACCGTTCACCGGGGCTTCAGTCACTGGCTCC-CTTGTCATCAC 375 Query 187 CCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT 241 || ||| || ||||||| |||| |||||||||||| ||| |||| | ||| Sbjct 376 GTCACCAACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA 435 Query 242 CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || ||||| ||| ||||||||| |||||||| || Sbjct 436 CGACTTTGCTGAGACTTGTGTTTTTGGTAAACAGTTGC 473 >seq45354 Length=1138 Score = 78.8 bits (86), Expect = 2e-12 Identities = 108/151 (72%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG----CGTTAGCT 183 |||| | ||||||||| ||||| ||||||||||| ||| ||| | | |||| | Sbjct 698 CGTTCTAGTTACGGCCACCGTTCACCGGGGCTTCAGTCACTGGCTCCCTTGTCATTAGGT 639 Query 184 AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 ||| | || |||||||||||| |||||| ||||| ||| |||| | ||| || Sbjct 638 CACCAACTTCCTTGACCTTCCGGCACTGGGCAGACGTCAGCCCCCATACATGGTCTTACG 579 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACA 274 ||||| ||| ||||||||| |||||| Sbjct 578 ACTTTGCTGAGACTTGTGTTTTTGGTAAACA 548 >seq31885 Length=14054 Score = 78.8 bits (86), Expect = 2e-12 Identities = 180/267 (67%), Gaps = 7/267 (3%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||||| || || |||||| ||||| || |||| | | || ||| Sbjct 9381 GCATCTTCACAAACATGTCTATTTCA-TGAGTTTCTCTCTGAGATGGTACTTAGATTGTT 9323 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || |||||| ||||||||||||| |||||| |||||| ||| ||| ||| |||| Sbjct 9322 ACACCTTTCGTGTAGGTCGGAACTTATATGACAAGAAATTTCACTAATTTAAGACTGTTA 9263 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| | || || || |||||| | ||| ||| | | |||| | ||| Sbjct 9262 TAGTTATGATTGCTATTCACTAGGGCTTTGGTCACTGGCTTTACTGTCATTAGGTCACCA 9203 Query 189 CA-TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | | || |||||||| ||| || || |||| ||||| || | | || | || Sbjct 9202 AACTTCCTTGACCTTCCGACACTAGGTTGGTGTCAACCCCTACACATGGTC-TTAGACTT 9144 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACA 274 |||| || || ||||||| |||||| Sbjct 9143 TGCAAAGACCTATGTTTTTGGTAAACA 9117 >seq3532 Length=3298 Score = 78.8 bits (86), Expect = 2e-12 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| || |||| | ||| || || ||| || Sbjct 2515 TTGACCTTCCGGCACTGGGCAGGCGTCAGCTCCCATACATGGTCTTACGATTTGGCAAAG 2456 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 ||||||||||| ||||||||||| |||||||| Sbjct 2455 ACCTGTGTTTTTAGTAAACAGTCGCCCAGGCCTGGT 2420 >seq118271 Length=2743 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 2645 TTGACCTTCCGGCACTGGGCAGGCGTCAACCCCCATACATGGTCTTACGACTTTGCGGAG 2586 Query 255 TGCTGTGTTTTTAATAAACAGTCGC 279 |||||||||| ||||||||||| Sbjct 2585 ACCTGTGTTTTTGGTAAACAGTCGC 2561 >seq87042 Length=1486 Score = 77.0 bits (84), Expect = 8e-12 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||| ||| Sbjct 703 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 762 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || || ||||||||||||| | |||| Sbjct 763 CGCGCCTCTAGGTATTCTCTACCTACCCAC 792 >seq57836 Length=7507 Score = 73.4 bits (80), Expect = 1e-10 Identities = 61/75 (81%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 88 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCG 147 |||||||||||| | |||||||||| |||| ||||||| | |||| |||| |||| ||| Sbjct 685 GTCGGAACTTACTCAACAAGGAATTATGCTATCTTAGGATCATTATAGTTATGGCCACCG 626 Query 148 TTTACCGGGGCTTCG 162 || || ||| |||| Sbjct 625 TTCACTAGGGTTTCG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1257345395392